mirror of
https://github.com/msberends/AMR.git
synced 2025-07-23 21:43:15 +02:00
(v1.7.1.9054) mdro() update - fixes #49, first_isolate() speedup
This commit is contained in:
171
docs/404.html
171
docs/404.html
@ -1,38 +1,79 @@
|
||||
<!-- Generated by pkgdown: do not edit by hand -->
|
||||
<!DOCTYPE html>
|
||||
<!-- Generated by pkgdown: do not edit by hand --><html lang="en">
|
||||
<head>
|
||||
<meta http-equiv="Content-Type" content="text/html; charset=UTF-8">
|
||||
<meta charset="utf-8">
|
||||
<html lang="en">
|
||||
<head>
|
||||
<meta charset="utf-8">
|
||||
<meta http-equiv="X-UA-Compatible" content="IE=edge">
|
||||
<meta name="viewport" content="width=device-width, initial-scale=1.0">
|
||||
|
||||
<title>Page not found (404) • AMR (for R)</title>
|
||||
<!-- favicons --><link rel="icon" type="image/png" sizes="16x16" href="https://msberends.github.io/AMR/favicon-16x16.png">
|
||||
<link rel="icon" type="image/png" sizes="32x32" href="https://msberends.github.io/AMR/favicon-32x32.png">
|
||||
<link rel="apple-touch-icon" type="image/png" sizes="180x180" href="https://msberends.github.io/AMR/apple-touch-icon.png">
|
||||
<link rel="apple-touch-icon" type="image/png" sizes="120x120" href="https://msberends.github.io/AMR/apple-touch-icon-120x120.png">
|
||||
<link rel="apple-touch-icon" type="image/png" sizes="76x76" href="https://msberends.github.io/AMR/apple-touch-icon-76x76.png">
|
||||
<link rel="apple-touch-icon" type="image/png" sizes="60x60" href="https://msberends.github.io/AMR/apple-touch-icon-60x60.png">
|
||||
<!-- jquery --><script src="https://cdnjs.cloudflare.com/ajax/libs/jquery/3.4.1/jquery.min.js" integrity="sha256-CSXorXvZcTkaix6Yvo6HppcZGetbYMGWSFlBw8HfCJo=" crossorigin="anonymous"></script><!-- Bootstrap --><link href="https://cdnjs.cloudflare.com/ajax/libs/bootswatch/3.4.0/flatly/bootstrap.min.css" rel="stylesheet" crossorigin="anonymous">
|
||||
<script src="https://cdnjs.cloudflare.com/ajax/libs/twitter-bootstrap/3.4.1/js/bootstrap.min.js" integrity="sha256-nuL8/2cJ5NDSSwnKD8VqreErSWHtnEP9E7AySL+1ev4=" crossorigin="anonymous"></script><!-- bootstrap-toc --><link rel="stylesheet" href="https://msberends.github.io/AMR/bootstrap-toc.css">
|
||||
<script src="https://msberends.github.io/AMR/bootstrap-toc.js"></script><!-- Font Awesome icons --><link rel="stylesheet" href="https://cdnjs.cloudflare.com/ajax/libs/font-awesome/5.12.1/css/all.min.css" integrity="sha256-mmgLkCYLUQbXn0B1SRqzHar6dCnv9oZFPEC1g1cwlkk=" crossorigin="anonymous">
|
||||
<link rel="stylesheet" href="https://cdnjs.cloudflare.com/ajax/libs/font-awesome/5.12.1/css/v4-shims.min.css" integrity="sha256-wZjR52fzng1pJHwx4aV2AO3yyTOXrcDW7jBpJtTwVxw=" crossorigin="anonymous">
|
||||
<!-- clipboard.js --><script src="https://cdnjs.cloudflare.com/ajax/libs/clipboard.js/2.0.6/clipboard.min.js" integrity="sha256-inc5kl9MA1hkeYUt+EC3BhlIgyp/2jDIyBLS6k3UxPI=" crossorigin="anonymous"></script><!-- headroom.js --><script src="https://cdnjs.cloudflare.com/ajax/libs/headroom/0.11.0/headroom.min.js" integrity="sha256-AsUX4SJE1+yuDu5+mAVzJbuYNPHj/WroHuZ8Ir/CkE0=" crossorigin="anonymous"></script><script src="https://cdnjs.cloudflare.com/ajax/libs/headroom/0.11.0/jQuery.headroom.min.js" integrity="sha256-ZX/yNShbjqsohH1k95liqY9Gd8uOiE1S4vZc+9KQ1K4=" crossorigin="anonymous"></script><!-- pkgdown --><link href="https://msberends.github.io/AMR/pkgdown.css" rel="stylesheet">
|
||||
<script src="https://msberends.github.io/AMR/pkgdown.js"></script><link href="https://msberends.github.io/AMR/extra.css" rel="stylesheet">
|
||||
<script src="https://msberends.github.io/AMR/extra.js"></script><meta property="og:title" content="Page not found (404)">
|
||||
<meta property="og:image" content="https://msberends.github.io/AMR/logo.png">
|
||||
<meta name="twitter:card" content="summary_large_image">
|
||||
<meta name="twitter:creator" content="@msberends">
|
||||
<meta name="twitter:site" content="@univgroningen">
|
||||
<!-- mathjax --><script src="https://cdnjs.cloudflare.com/ajax/libs/mathjax/2.7.5/MathJax.js" integrity="sha256-nvJJv9wWKEm88qvoQl9ekL2J+k/RWIsaSScxxlsrv8k=" crossorigin="anonymous"></script><script src="https://cdnjs.cloudflare.com/ajax/libs/mathjax/2.7.5/config/TeX-AMS-MML_HTMLorMML.js" integrity="sha256-84DKXVJXs0/F8OTMzX4UR909+jtl4G7SPypPavF+GfA=" crossorigin="anonymous"></script><!--[if lt IE 9]>
|
||||
|
||||
<!-- favicons -->
|
||||
<link rel="icon" type="image/png" sizes="16x16" href="https://msberends.github.io/AMR//favicon-16x16.png">
|
||||
<link rel="icon" type="image/png" sizes="32x32" href="https://msberends.github.io/AMR//favicon-32x32.png">
|
||||
<link rel="apple-touch-icon" type="image/png" sizes="180x180" href="https://msberends.github.io/AMR//apple-touch-icon.png" />
|
||||
<link rel="apple-touch-icon" type="image/png" sizes="120x120" href="https://msberends.github.io/AMR//apple-touch-icon-120x120.png" />
|
||||
<link rel="apple-touch-icon" type="image/png" sizes="76x76" href="https://msberends.github.io/AMR//apple-touch-icon-76x76.png" />
|
||||
<link rel="apple-touch-icon" type="image/png" sizes="60x60" href="https://msberends.github.io/AMR//apple-touch-icon-60x60.png" />
|
||||
|
||||
<!-- jquery -->
|
||||
<script src="https://cdnjs.cloudflare.com/ajax/libs/jquery/3.4.1/jquery.min.js" integrity="sha256-CSXorXvZcTkaix6Yvo6HppcZGetbYMGWSFlBw8HfCJo=" crossorigin="anonymous"></script>
|
||||
<!-- Bootstrap -->
|
||||
<link href="https://cdnjs.cloudflare.com/ajax/libs/bootswatch/3.4.0/flatly/bootstrap.min.css" rel="stylesheet" crossorigin="anonymous" />
|
||||
|
||||
|
||||
<script src="https://cdnjs.cloudflare.com/ajax/libs/twitter-bootstrap/3.4.1/js/bootstrap.min.js" integrity="sha256-nuL8/2cJ5NDSSwnKD8VqreErSWHtnEP9E7AySL+1ev4=" crossorigin="anonymous"></script>
|
||||
|
||||
<!-- bootstrap-toc -->
|
||||
<link rel="stylesheet" href="https://msberends.github.io/AMR//bootstrap-toc.css">
|
||||
<script src="https://msberends.github.io/AMR//bootstrap-toc.js"></script>
|
||||
|
||||
<!-- Font Awesome icons -->
|
||||
<link rel="stylesheet" href="https://cdnjs.cloudflare.com/ajax/libs/font-awesome/5.12.1/css/all.min.css" integrity="sha256-mmgLkCYLUQbXn0B1SRqzHar6dCnv9oZFPEC1g1cwlkk=" crossorigin="anonymous" />
|
||||
<link rel="stylesheet" href="https://cdnjs.cloudflare.com/ajax/libs/font-awesome/5.12.1/css/v4-shims.min.css" integrity="sha256-wZjR52fzng1pJHwx4aV2AO3yyTOXrcDW7jBpJtTwVxw=" crossorigin="anonymous" />
|
||||
|
||||
<!-- clipboard.js -->
|
||||
<script src="https://cdnjs.cloudflare.com/ajax/libs/clipboard.js/2.0.6/clipboard.min.js" integrity="sha256-inc5kl9MA1hkeYUt+EC3BhlIgyp/2jDIyBLS6k3UxPI=" crossorigin="anonymous"></script>
|
||||
|
||||
<!-- headroom.js -->
|
||||
<script src="https://cdnjs.cloudflare.com/ajax/libs/headroom/0.11.0/headroom.min.js" integrity="sha256-AsUX4SJE1+yuDu5+mAVzJbuYNPHj/WroHuZ8Ir/CkE0=" crossorigin="anonymous"></script>
|
||||
<script src="https://cdnjs.cloudflare.com/ajax/libs/headroom/0.11.0/jQuery.headroom.min.js" integrity="sha256-ZX/yNShbjqsohH1k95liqY9Gd8uOiE1S4vZc+9KQ1K4=" crossorigin="anonymous"></script>
|
||||
|
||||
<!-- pkgdown -->
|
||||
<link href="https://msberends.github.io/AMR//pkgdown.css" rel="stylesheet">
|
||||
<script src="https://msberends.github.io/AMR//pkgdown.js"></script>
|
||||
|
||||
|
||||
|
||||
<link href="https://msberends.github.io/AMR//extra.css" rel="stylesheet">
|
||||
<script src="https://msberends.github.io/AMR//extra.js"></script>
|
||||
|
||||
<meta property="og:title" content="Page not found (404)" />
|
||||
<meta property="og:image" content="https://msberends.github.io/AMR/logo.png" />
|
||||
<meta name="twitter:card" content="summary_large_image" />
|
||||
<meta name="twitter:creator" content="@msberends" />
|
||||
<meta name="twitter:site" content="@univgroningen" />
|
||||
|
||||
|
||||
|
||||
|
||||
<!-- mathjax -->
|
||||
<script src="https://cdnjs.cloudflare.com/ajax/libs/mathjax/2.7.5/MathJax.js" integrity="sha256-nvJJv9wWKEm88qvoQl9ekL2J+k/RWIsaSScxxlsrv8k=" crossorigin="anonymous"></script>
|
||||
<script src="https://cdnjs.cloudflare.com/ajax/libs/mathjax/2.7.5/config/TeX-AMS-MML_HTMLorMML.js" integrity="sha256-84DKXVJXs0/F8OTMzX4UR909+jtl4G7SPypPavF+GfA=" crossorigin="anonymous"></script>
|
||||
|
||||
<!--[if lt IE 9]>
|
||||
<script src="https://oss.maxcdn.com/html5shiv/3.7.3/html5shiv.min.js"></script>
|
||||
<script src="https://oss.maxcdn.com/respond/1.4.2/respond.min.js"></script>
|
||||
<![endif]-->
|
||||
</head>
|
||||
<body data-spy="scroll" data-target="#toc">
|
||||
|
||||
|
||||
|
||||
|
||||
</head>
|
||||
|
||||
<body data-spy="scroll" data-target="#toc">
|
||||
<div class="container template-title-body">
|
||||
<header><div class="navbar navbar-default navbar-fixed-top" role="navigation">
|
||||
<header>
|
||||
<div class="navbar navbar-default navbar-fixed-top" role="navigation">
|
||||
<div class="container">
|
||||
<div class="navbar-header">
|
||||
<button type="button" class="navbar-toggle collapsed" data-toggle="collapse" data-target="#navbar" aria-expanded="false">
|
||||
@ -42,22 +83,22 @@
|
||||
<span class="icon-bar"></span>
|
||||
</button>
|
||||
<span class="navbar-brand">
|
||||
<a class="navbar-link" href="https://msberends.github.io/AMR/index.html">AMR (for R)</a>
|
||||
<span class="version label label-default" data-toggle="tooltip" data-placement="bottom" title="Latest development version">1.7.1.9051</span>
|
||||
<a class="navbar-link" href="https://msberends.github.io/AMR//index.html">AMR (for R)</a>
|
||||
<span class="version label label-default" data-toggle="tooltip" data-placement="bottom" title="Latest development version">1.7.1.9054</span>
|
||||
</span>
|
||||
</div>
|
||||
|
||||
<div id="navbar" class="navbar-collapse collapse">
|
||||
<ul class="nav navbar-nav">
|
||||
<li>
|
||||
<a href="https://msberends.github.io/AMR/index.html">
|
||||
<li>
|
||||
<a href="index.html">
|
||||
<span class="fa fa-home"></span>
|
||||
|
||||
Home
|
||||
</a>
|
||||
</li>
|
||||
<li class="dropdown">
|
||||
<a href="https://msberends.github.io/AMR/#" class="dropdown-toggle" data-toggle="dropdown" role="button" aria-expanded="false">
|
||||
<a href="#" class="dropdown-toggle" data-toggle="dropdown" role="button" aria-expanded="false">
|
||||
<span class="fa fa-question-circle"></span>
|
||||
|
||||
How to
|
||||
@ -65,78 +106,78 @@
|
||||
<span class="caret"></span>
|
||||
</a>
|
||||
<ul class="dropdown-menu" role="menu">
|
||||
<li>
|
||||
<a href="https://msberends.github.io/AMR/articles/AMR.html">
|
||||
<li>
|
||||
<a href="articles/AMR.html">
|
||||
<span class="fa fa-directions"></span>
|
||||
|
||||
Conduct AMR analysis
|
||||
</a>
|
||||
</li>
|
||||
<li>
|
||||
<a href="https://msberends.github.io/AMR/articles/resistance_predict.html">
|
||||
<a href="articles/resistance_predict.html">
|
||||
<span class="fa fa-dice"></span>
|
||||
|
||||
Predict antimicrobial resistance
|
||||
</a>
|
||||
</li>
|
||||
<li>
|
||||
<a href="https://msberends.github.io/AMR/articles/datasets.html">
|
||||
<a href="articles/datasets.html">
|
||||
<span class="fa fa-database"></span>
|
||||
|
||||
Data sets for download / own use
|
||||
</a>
|
||||
</li>
|
||||
<li>
|
||||
<a href="https://msberends.github.io/AMR/articles/PCA.html">
|
||||
<a href="articles/PCA.html">
|
||||
<span class="fa fa-compress"></span>
|
||||
|
||||
Conduct principal component analysis for AMR
|
||||
</a>
|
||||
</li>
|
||||
<li>
|
||||
<a href="https://msberends.github.io/AMR/articles/MDR.html">
|
||||
<a href="articles/MDR.html">
|
||||
<span class="fa fa-skull-crossbones"></span>
|
||||
|
||||
Determine multi-drug resistance (MDR)
|
||||
</a>
|
||||
</li>
|
||||
<li>
|
||||
<a href="https://msberends.github.io/AMR/articles/WHONET.html">
|
||||
<a href="articles/WHONET.html">
|
||||
<span class="fa fa-globe-americas"></span>
|
||||
|
||||
Work with WHONET data
|
||||
</a>
|
||||
</li>
|
||||
<li>
|
||||
<a href="https://msberends.github.io/AMR/articles/SPSS.html">
|
||||
<a href="articles/SPSS.html">
|
||||
<span class="fa fa-file-upload"></span>
|
||||
|
||||
Import data from SPSS/SAS/Stata
|
||||
</a>
|
||||
</li>
|
||||
<li>
|
||||
<a href="https://msberends.github.io/AMR/articles/EUCAST.html">
|
||||
<a href="articles/EUCAST.html">
|
||||
<span class="fa fa-exchange-alt"></span>
|
||||
|
||||
Apply EUCAST rules
|
||||
</a>
|
||||
</li>
|
||||
<li>
|
||||
<a href="https://msberends.github.io/AMR/reference/mo_property.html">
|
||||
<a href="reference/mo_property.html">
|
||||
<span class="fa fa-bug"></span>
|
||||
|
||||
Get properties of a microorganism
|
||||
</a>
|
||||
</li>
|
||||
<li>
|
||||
<a href="https://msberends.github.io/AMR/reference/ab_property.html">
|
||||
<a href="reference/ab_property.html">
|
||||
<span class="fa fa-capsules"></span>
|
||||
|
||||
Get properties of an antibiotic
|
||||
</a>
|
||||
</li>
|
||||
<li>
|
||||
<a href="https://msberends.github.io/AMR/articles/benchmarks.html">
|
||||
<a href="articles/benchmarks.html">
|
||||
<span class="fa fa-shipping-fast"></span>
|
||||
|
||||
Other: benchmarks
|
||||
@ -145,29 +186,29 @@
|
||||
</ul>
|
||||
</li>
|
||||
<li>
|
||||
<a href="https://msberends.github.io/AMR/reference/index.html">
|
||||
<a href="reference/index.html">
|
||||
<span class="fa fa-book-open"></span>
|
||||
|
||||
Manual
|
||||
</a>
|
||||
</li>
|
||||
<li>
|
||||
<a href="https://msberends.github.io/AMR/authors.html">
|
||||
<a href="authors.html">
|
||||
<span class="fa fa-users"></span>
|
||||
|
||||
Authors
|
||||
</a>
|
||||
</li>
|
||||
<li>
|
||||
<a href="https://msberends.github.io/AMR/news/index.html">
|
||||
<a href="news/index.html">
|
||||
<span class="far fa-newspaper"></span>
|
||||
|
||||
Changelog
|
||||
</a>
|
||||
</li>
|
||||
</ul>
|
||||
<ul class="nav navbar-nav navbar-right">
|
||||
<li>
|
||||
<ul class="nav navbar-nav navbar-right">
|
||||
<li>
|
||||
<a href="https://github.com/msberends/AMR">
|
||||
<span class="fab fa-github"></span>
|
||||
|
||||
@ -175,16 +216,16 @@
|
||||
</a>
|
||||
</li>
|
||||
</ul>
|
||||
</div>
|
||||
<!--/.nav-collapse -->
|
||||
</div>
|
||||
<!--/.container -->
|
||||
</div>
|
||||
<!--/.navbar -->
|
||||
|
||||
</div><!--/.nav-collapse -->
|
||||
</div><!--/.container -->
|
||||
</div><!--/.navbar -->
|
||||
|
||||
|
||||
|
||||
</header><div class="row">
|
||||
</header>
|
||||
|
||||
<div class="row">
|
||||
<div class="contents col-md-9">
|
||||
<div class="page-header">
|
||||
<h1>Page not found (404)</h1>
|
||||
@ -195,31 +236,31 @@ Content not found. Please use links in the navbar.
|
||||
</div>
|
||||
|
||||
<div class="col-md-3 hidden-xs hidden-sm" id="pkgdown-sidebar">
|
||||
<nav id="toc" data-toggle="toc" class="sticky-top"><h2 data-toc-skip>Contents</h2>
|
||||
<nav id="toc" data-toggle="toc" class="sticky-top">
|
||||
<h2 data-toc-skip>Contents</h2>
|
||||
</nav>
|
||||
</div>
|
||||
</div>
|
||||
|
||||
</div>
|
||||
|
||||
|
||||
|
||||
<footer><div class="copyright">
|
||||
<p></p>
|
||||
<p>Developed by <a href="https://www.rug.nl/staff/m.s.berends/" class="external-link">Matthijs S. Berends</a>, Christian F. Luz.</p>
|
||||
<footer>
|
||||
<div class="copyright">
|
||||
<p>Developed by <a href='https://www.rug.nl/staff/m.s.berends/'>Matthijs S. Berends</a>, Christian F. Luz, Dennis Souverein, Erwin E. A. Hassing.</p>
|
||||
</div>
|
||||
|
||||
<div class="pkgdown">
|
||||
<p></p>
|
||||
<p>Site built with <a href="https://pkgdown.r-lib.org/" class="external-link">pkgdown</a> 1.6.1.9001.</p>
|
||||
<p>Site built with <a href="https://pkgdown.r-lib.org/">pkgdown</a> 1.6.1.</p>
|
||||
</div>
|
||||
|
||||
</footer>
|
||||
</div>
|
||||
</div>
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
</body>
|
||||
</html>
|
||||
|
||||
|
||||
|
||||
Reference in New Issue
Block a user