(v1.7.1.9054) mdro() update - fixes #49, first_isolate() speedup

man/as.rsi.Rd

@@ -1,17 +1,24 @@
 % Generated by roxygen2: do not edit by hand
 % Please edit documentation in R/rsi.R
+\docType{data}
 \name{as.rsi}
 \alias{as.rsi}
 \alias{rsi}
+\alias{NA_rsi_}
 \alias{is.rsi}
 \alias{is.rsi.eligible}
 \alias{as.rsi.mic}
 \alias{as.rsi.disk}
 \alias{as.rsi.data.frame}
 \title{Interpret MIC and Disk Values, or Clean Raw R/SI Data}
+\format{
+An object of class \code{rsi} (inherits from \code{ordered}, \code{factor}) of length 1.
+}
 \usage{
 as.rsi(x, ...)
 
+NA_rsi_
+
 is.rsi(x)
 
 is.rsi.eligible(x, threshold = 0.05)
@@ -125,6 +132,8 @@ The function \code{\link[=is.rsi]{is.rsi()}} detects if the input contains class
 
 The function \code{\link[=is.rsi.eligible]{is.rsi.eligible()}} returns \code{TRUE} when a columns contains at most 5\% invalid antimicrobial interpretations (not S and/or I and/or R), and \code{FALSE} otherwise. The threshold of 5\% can be set with the \code{threshold} argument. If the input is a \link{data.frame}, it iterates over all columns and returns a \link{logical} vector.
 }
+
+\code{NA_rsi_} is a missing value of the new \verb{<rsi>} class.
 }
 \section{Interpretation of R and S/I}{
 
@@ -247,3 +256,4 @@ if (require("dplyr")) {
 \seealso{
 \code{\link[=as.mic]{as.mic()}}, \code{\link[=as.disk]{as.disk()}}, \code{\link[=as.mo]{as.mo()}}
 }
+\keyword{datasets}