From 69dc8795ae63d831bb8c560087e1bdd9a162e6c2 Mon Sep 17 00:00:00 2001 From: github-actions <41898282+github-actions[bot]@users.noreply.github.com> Date: Wed, 22 Feb 2023 13:47:35 +0000 Subject: [PATCH] Built site for AMR: 1.8.2.9138@dad2530 --- 404.html | 2 +- LICENSE-text.html | 2 +- articles/AMR.html | 569 +++++++++--------- .../AMR_files/figure-html/disk_plots-1.png | Bin 38759 -> 39287 bytes .../figure-html/disk_plots_mo_ab-1.png | Bin 56319 -> 55289 bytes .../AMR_files/figure-html/mic_plots-1.png | Bin 28086 -> 27745 bytes .../AMR_files/figure-html/mic_plots-2.png | Bin 39111 -> 36580 bytes .../figure-html/mic_plots_mo_ab-1.png | Bin 38816 -> 38574 bytes .../figure-html/mic_plots_mo_ab-2.png | Bin 50844 -> 49585 bytes articles/AMR_files/figure-html/plot 1-1.png | Bin 42052 -> 41510 bytes articles/AMR_files/figure-html/plot 3-1.png | Bin 28418 -> 28459 bytes articles/AMR_files/figure-html/plot 4-1.png | Bin 78229 -> 78253 bytes articles/AMR_files/figure-html/plot 5-1.png | Bin 49897 -> 49910 bytes articles/EUCAST.html | 2 +- articles/MDR.html | 56 +- articles/PCA.html | 6 +- articles/SPSS.html | 6 +- articles/WHONET.html | 15 +- articles/datasets.html | 20 +- articles/index.html | 2 +- articles/resistance_predict.html | 2 +- articles/welcome_to_AMR.html | 2 +- authors.html | 2 +- index.html | 4 +- news/index.html | 28 +- pkgdown.yml | 2 +- reference/AMR-deprecated.html | 4 +- reference/AMR-options.html | 15 +- reference/AMR.html | 2 +- reference/Rplot005.png | Bin 13278 -> 13184 bytes reference/Rplot006.png | Bin 12816 -> 12708 bytes reference/Rplot007.png | Bin 13683 -> 13657 bytes reference/Rplot008.png | Bin 16702 -> 17950 bytes reference/Rplot009.png | Bin 8406 -> 8082 bytes reference/WHOCC.html | 2 +- reference/WHONET.html | 91 +-- reference/ab_from_text.html | 9 +- reference/ab_property.html | 12 +- reference/add_custom_antimicrobials.html | 22 +- reference/add_custom_microorganisms.html | 6 +- reference/age.html | 24 +- reference/age_groups.html | 4 +- reference/antibiogram-1.png | Bin 26492 -> 15255 bytes reference/antibiogram-2.png | Bin 39648 -> 15454 bytes reference/antibiogram-3.png | Bin 24603 -> 0 bytes reference/antibiogram-4.png | Bin 32347 -> 0 bytes reference/antibiogram.html | 69 +-- reference/antibiotic_class_selectors.html | 86 +-- reference/antibiotics.html | 2 +- reference/as.ab.html | 9 +- reference/as.av.html | 4 +- reference/as.disk.html | 2 +- reference/as.mic.html | 4 +- reference/as.mo.html | 33 +- reference/as.sir.html | 34 +- reference/atc_online.html | 2 +- reference/av_from_text.html | 6 +- reference/av_property.html | 4 +- reference/availability.html | 4 +- reference/bug_drug_combinations.html | 10 +- reference/clinical_breakpoints.html | 2 +- reference/count.html | 8 +- reference/custom_eucast_rules.html | 56 +- reference/dosage.html | 6 +- reference/eucast_rules.html | 22 +- reference/example_isolates.html | 4 +- reference/example_isolates_unclean.html | 2 +- reference/first_isolate.html | 12 +- reference/g.test.html | 2 +- reference/get_episode.html | 110 ++-- reference/ggplot_pca.html | 6 +- reference/ggplot_sir.html | 8 +- reference/guess_ab_col.html | 4 +- reference/index.html | 4 +- reference/intrinsic_resistant.html | 2 +- reference/italicise_taxonomy.html | 2 +- reference/join.html | 2 +- reference/key_antimicrobials.html | 6 +- reference/kurtosis.html | 6 +- reference/like.html | 2 +- reference/mdro.html | 8 +- reference/mean_amr_distance.html | 84 +-- reference/microorganisms.codes.html | 2 +- reference/microorganisms.html | 4 +- reference/mo_matching_score.html | 6 +- reference/mo_property.html | 37 +- reference/mo_source.html | 6 +- reference/pca.html | 6 +- reference/plot-1.png | Bin 27279 -> 27287 bytes reference/plot-2.png | Bin 27156 -> 26491 bytes reference/plot-3.png | Bin 28569 -> 27846 bytes reference/plot-4.png | Bin 38990 -> 38994 bytes reference/plot-5.png | Bin 38827 -> 38171 bytes reference/plot-6.png | Bin 37590 -> 36872 bytes reference/plot-7.png | Bin 38432 -> 38375 bytes reference/plot-8.png | Bin 52990 -> 54792 bytes reference/plot-9.png | Bin 26145 -> 24794 bytes reference/plot.html | 8 +- reference/proportion.html | 10 +- reference/random.html | 37 +- reference/resistance_predict.html | 6 +- reference/skewness.html | 4 +- reference/translate.html | 17 +- search.json | 2 +- 104 files changed, 827 insertions(+), 856 deletions(-) delete mode 100644 reference/antibiogram-3.png delete mode 100644 reference/antibiogram-4.png diff --git a/404.html b/404.html index be9635a7..19574612 100644 --- a/404.html +++ b/404.html @@ -36,7 +36,7 @@ AMR (for R) - 1.8.2.9137 + 1.8.2.9138