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@ -38,7 +38,7 @@
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<a class="navbar-brand me-2" href="../index.html">AMR (for R)</a>
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<small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">1.8.2.9073</small>
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<small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">1.8.2.9074</small>
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<button class="navbar-toggler" type="button" data-bs-toggle="collapse" data-bs-target="#navbar" aria-controls="navbar" aria-expanded="false" aria-label="Toggle navigation">
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@ -375,19 +375,19 @@ names or codes, this would have worked exactly the same way:</p>
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<div class="sourceCode" id="cb8"><pre class="downlit sourceCode r">
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<code class="sourceCode R"><span><span class="fu"><a href="https://rdrr.io/r/utils/head.html" class="external-link">head</a></span><span class="op">(</span><span class="va">my_TB_data</span><span class="op">)</span></span>
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<span><span class="co"># rifampicin isoniazid gatifloxacin ethambutol pyrazinamide moxifloxacin</span></span>
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<span><span class="co"># 1 I S R I R I</span></span>
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<span><span class="co"># 2 I R R I S R</span></span>
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<span><span class="co"># 3 S R S I S S</span></span>
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<span><span class="co"># 4 S R S I I I</span></span>
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<span><span class="co"># 5 R R S I S S</span></span>
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<span><span class="co"># 6 S S S R I I</span></span>
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<span><span class="co"># 1 S R S S R R</span></span>
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<span><span class="co"># 2 I S I S S R</span></span>
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<span><span class="co"># 3 S I I R R S</span></span>
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<span><span class="co"># 4 S R I R S R</span></span>
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<span><span class="co"># 5 I R S S S I</span></span>
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<span><span class="co"># 6 R R S I I I</span></span>
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<span><span class="co"># kanamycin</span></span>
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<span><span class="co"># 1 R</span></span>
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<span><span class="co"># 2 S</span></span>
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<span><span class="co"># 3 S</span></span>
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<span><span class="co"># 3 I</span></span>
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<span><span class="co"># 4 R</span></span>
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<span><span class="co"># 5 R</span></span>
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<span><span class="co"># 6 I</span></span></code></pre></div>
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<span><span class="co"># 5 S</span></span>
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<span><span class="co"># 6 S</span></span></code></pre></div>
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<p>We can now add the interpretation of MDR-TB to our data set. You can
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use:</p>
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<div class="sourceCode" id="cb9"><pre class="downlit sourceCode r">
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@ -428,40 +428,40 @@ Unique: 5</p>
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<tr class="odd">
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<td align="left">1</td>
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<td align="left">Mono-resistant</td>
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<td align="right">3237</td>
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<td align="right">64.74%</td>
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<td align="right">3237</td>
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<td align="right">64.74%</td>
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<td align="right">3249</td>
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<td align="right">64.98%</td>
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<td align="right">3249</td>
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<td align="right">64.98%</td>
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</tr>
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<tr class="even">
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<td align="left">2</td>
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<td align="left">Negative</td>
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<td align="right">1000</td>
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<td align="right">20.00%</td>
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<td align="right">4237</td>
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<td align="right">84.74%</td>
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<td align="right">977</td>
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<td align="right">19.54%</td>
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<td align="right">4226</td>
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<td align="right">84.52%</td>
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</tr>
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<tr class="odd">
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<td align="left">3</td>
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<td align="left">Multi-drug-resistant</td>
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<td align="right">410</td>
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<td align="right">8.20%</td>
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<td align="right">4647</td>
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<td align="right">92.94%</td>
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<td align="right">420</td>
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<td align="right">8.40%</td>
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<td align="right">4646</td>
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<td align="right">92.92%</td>
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</tr>
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<tr class="even">
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<td align="left">4</td>
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<td align="left">Poly-resistant</td>
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<td align="right">261</td>
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<td align="right">5.22%</td>
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<td align="right">4908</td>
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<td align="right">98.16%</td>
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<td align="right">249</td>
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<td align="right">4.98%</td>
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<td align="right">4895</td>
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<td align="right">97.90%</td>
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</tr>
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<tr class="odd">
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<td align="left">5</td>
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<td align="left">Extensively drug-resistant</td>
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<td align="right">92</td>
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<td align="right">1.84%</td>
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<td align="right">105</td>
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<td align="right">2.10%</td>
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<td align="right">5000</td>
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<td align="right">100.00%</td>
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</tr>
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