diff --git a/DESCRIPTION b/DESCRIPTION index 0b1986e78..325ab8415 100644 --- a/DESCRIPTION +++ b/DESCRIPTION @@ -1,5 +1,5 @@ Package: AMR -Version: 3.0.1.9097 +Version: 3.0.1.9098 Date: 2026-10-03 Title: Antimicrobial Resistance Data Analysis Description: Functions to simplify and standardise antimicrobial resistance (AMR) diff --git a/NEWS.md b/NEWS.md index 29b804528..abcf8f047 100644 --- a/NEWS.md +++ b/NEWS.md @@ -1,4 +1,4 @@ -# AMR 3.0.1.9097 +# AMR 3.0.1.9098 Planned as v3.1.0, mid October 2026. diff --git a/data-raw/microorganisms_files/mo_code_renames.csv b/data-raw/microorganisms_files/mo_code_renames.csv index fe81543ae..91d1321c1 100644 --- a/data-raw/microorganisms_files/mo_code_renames.csv +++ b/data-raw/microorganisms_files/mo_code_renames.csv @@ -1,2 +1,2 @@ "mo","registry_name","new_name","reason","approved_by","approved_date" -"B_MYCBC_AVIM-C","Mycobacterium avium-intracellulare complex","Mycobacterium avium complex","Species group renamed in the development version of 2026; same group of organisms","","" +"B_MYCBC_AVIM-C","Mycobacterium avium-intracellulare complex","Mycobacterium avium complex","Same group of organisms; name as curated in data-raw/Species groups.xlsx since July 2023","Matthijs S. Berends","2026-10-03" diff --git a/tests/testthat/microorganisms_known_defects.csv b/tests/testthat/microorganisms_known_defects.csv index c3283eea3..795499908 100644 --- a/tests/testthat/microorganisms_known_defects.csv +++ b/tests/testthat/microorganisms_known_defects.csv @@ -378,7 +378,6 @@ "registered_code_with_other_taxon","F_LCNLL (Lecaniella)" "registered_code_with_other_taxon","F_LECID_GLMR (Lecidea glomerella)" "registered_code_with_other_taxon","F_LECID_SBLT (Lecidea subuletorum)" -"registered_code_with_other_taxon","B_MYCBC_AVIM-C (Mycobacterium avium complex)" "registered_code_with_other_taxon","B_MYCBC_NNSE (Mycobacterium holstebronense)" "registered_code_with_other_taxon","F_NMSPR (Naemaspora)" "registered_code_with_other_taxon","F_NCNTH (Neoconiothyrium)" @@ -1706,7 +1705,6 @@ "released_taxon_missing","B_MWSNL (Mawsoniella)" "released_taxon_missing","B_MWSNL_ASTR (Mawsoniella australis)" "released_taxon_missing","B_MYCBC_AHVZ (Mycobacterium ahvazicum)" -"released_taxon_missing","B_MYCBC_AVIM-C (Mycobacterium avium-intracellulare complex)" "released_taxon_missing","B_MYCBC_CNTT (Mycobacterium canettii)" "released_taxon_missing","B_MYCBC_DXNT (Mycobacterium dioxanotrophicus)" "released_taxon_missing","B_MYCBC_GLLN (Mycobacterium gallinarum)"