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fix missing R breakpoints

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dr. M.S. (Matthijs) Berends
2022-10-29 14:15:23 +02:00
parent c2801ba7a1
commit 6ad7857d39
34 changed files with 959 additions and 865 deletions
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NEWS.md
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@@ -1,4 +1,4 @@
# AMR 1.8.2.9033
# AMR 1.8.2.9034
This version will eventually become v2.0! We're happy to reach a new major milestone soon!
@@ -35,6 +35,7 @@ This version will eventually become v2.0! We're happy to reach a new major miles
### Changed
* Fix for using `as.rsi()` on certain EUCAST breakpoints for MIC values
* Fix for using `as.rsi()` on `NA` values (e.g. `as.rsi(as.disk(NA), ...)`)
* Fix for using `as.rsi()` on drug-drug combinations with multiple breakpoints for different body sites
* Removed `as.integer()` for MIC values, since MIC are not integer values and running `table()` on MIC values consequently failed for not being able to retrieve the level position (as that's how normally `as.integer()` on `factor`s work)
* `droplevels()` on MIC will now return a common `factor` at default and will lose the `<mic>` class. Use `droplevels(..., as.mic = TRUE)` to keep the `<mic>` class.
* Small fix for using `ab_from_text()`
@@ -51,6 +52,7 @@ This version will eventually become v2.0! We're happy to reach a new major miles
* Fix for using `as.ab()` on `NA` values
* Updated support for all WHONET 2022 microorganism codes
* Antimicrobial interpretation 'SDD' (susceptible dose-dependent, coined by CLSI) will be interpreted as 'I' to comply with EUCAST's 'I' in `as.rsi()`
* Fix for `mo_shortname()` in case of higher taxonomic ranks (order, class, phylum)
### Other
* New website to make use of the new Bootstrap 5 and pkgdown 2.0. The website now contains results for all examples and will be automatically regenerated with every change to our repository, using GitHub Actions