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fix missing R breakpoints

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This commit is contained in:
dr. M.S. (Matthijs) Berends
2022-10-29 14:15:23 +02:00
parent c2801ba7a1
commit 6ad7857d39
34 changed files with 959 additions and 865 deletions
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5
R/disk.R
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@ -34,6 +34,8 @@
#' @param x vector
#' @param na.rm a [logical] indicating whether missing values should be removed
#' @details Interpret disk values as RSI values with [as.rsi()]. It supports guidelines from EUCAST and CLSI.
#'
#' Disk diffusion growth zone sizes must be between 6 and 50 millimetres. Values higher than 50 but lower than 100 will be maximised to 50. All others input values outside the 6-50 range will return `NA`.
#' @return An [integer] with additional class [`disk`]
#' @aliases disk
#' @export
@ -107,7 +109,8 @@ as.disk <- function(x, na.rm = FALSE) {
x <- as.integer(ceiling(clean_double2(x)))
# disks can never be less than 6 mm (size of smallest disk) or more than 50 mm
x[x < 6 | x > 50] <- NA_integer_
x[x < 6 | x > 99] <- NA_integer_
x[x > 50] <- 50L
na_after <- length(x[is.na(x)])
if (na_before != na_after) {