mirror of
https://github.com/msberends/AMR.git
synced 2025-07-10 21:01:57 +02:00
big website update, licence txt update
This commit is contained in:
@ -49,7 +49,7 @@
|
||||
|
||||
<meta property="og:description" content="Use these functions to return a specific property of an antibiotic from the antibiotics data set, based on their ATC code. Get such a code with as.atc." />
|
||||
|
||||
<meta property="og:image" content="https://msberends.gitlab.io/logo.png" />
|
||||
<meta property="og:image" content="https://msberends.gitlab.io/AMR/logo.png" />
|
||||
<meta name="twitter:card" content="summary" />
|
||||
|
||||
|
||||
@ -80,7 +80,7 @@
|
||||
</button>
|
||||
<span class="navbar-brand">
|
||||
<a class="navbar-link" href="../index.html">AMR (for R)</a>
|
||||
<span class="version label label-default" data-toggle="tooltip" data-placement="bottom" title="Released version">0.5.0.9008</span>
|
||||
<span class="version label label-default" data-toggle="tooltip" data-placement="bottom" title="Released version">0.5.0.9009</span>
|
||||
</span>
|
||||
</div>
|
||||
|
||||
@ -93,12 +93,65 @@
|
||||
Home
|
||||
</a>
|
||||
</li>
|
||||
<li>
|
||||
<a href="../articles/AMR.html">
|
||||
<span class="fa fa-directions"></span>
|
||||
<li class="dropdown">
|
||||
<a href="#" class="dropdown-toggle" data-toggle="dropdown" role="button" aria-expanded="false">
|
||||
<span class="fa fa-question-circle"></span>
|
||||
|
||||
Get Started
|
||||
How to
|
||||
|
||||
<span class="caret"></span>
|
||||
</a>
|
||||
<ul class="dropdown-menu" role="menu">
|
||||
<li>
|
||||
<a href="../articles/AMR.html">
|
||||
<span class="fa fa-directions"></span>
|
||||
|
||||
Conduct AMR analysis
|
||||
</a>
|
||||
</li>
|
||||
<li>
|
||||
<a href="../articles/Predict.html">
|
||||
<span class="fa fa-dice"></span>
|
||||
|
||||
Predict antimicrobial resistance
|
||||
</a>
|
||||
</li>
|
||||
<li>
|
||||
<a href="../articles/EUCAST.html">
|
||||
<span class="fa fa-exchange-alt"></span>
|
||||
|
||||
Apply EUCAST rules
|
||||
</a>
|
||||
</li>
|
||||
<li>
|
||||
<a href="../articles/mo_property.html">
|
||||
<span class="fa fa-bug"></span>
|
||||
|
||||
Get properties of a microorganism
|
||||
</a>
|
||||
</li>
|
||||
<li>
|
||||
<a href="../articles/ab_property.html">
|
||||
<span class="fa fa-capsules"></span>
|
||||
|
||||
Get properties of an antibiotic
|
||||
</a>
|
||||
</li>
|
||||
<li>
|
||||
<a href="../articles/freq.html">
|
||||
<span class="fa fa-sort-amount-down"></span>
|
||||
|
||||
Create frequency tables
|
||||
</a>
|
||||
</li>
|
||||
<li>
|
||||
<a href="../articles/G_test.html">
|
||||
<span class="fa fa-clipboard-check"></span>
|
||||
|
||||
Use the G-test
|
||||
</a>
|
||||
</li>
|
||||
</ul>
|
||||
</li>
|
||||
<li>
|
||||
<a href="../reference/">
|
||||
@ -121,17 +174,17 @@
|
||||
Changelog
|
||||
</a>
|
||||
</li>
|
||||
<li>
|
||||
</ul>
|
||||
|
||||
<ul class="nav navbar-nav navbar-right">
|
||||
<li>
|
||||
<a href="https://gitlab.com/msberends/AMR">
|
||||
<span class="fab fa fab fa-gitlab"></span>
|
||||
|
||||
Source Code
|
||||
</a>
|
||||
</li>
|
||||
</ul>
|
||||
|
||||
<ul class="nav navbar-nav navbar-right">
|
||||
<li>
|
||||
<li>
|
||||
<a href="../LICENSE-text.html">
|
||||
<span class="fa fa-book"></span>
|
||||
|
||||
@ -204,13 +257,26 @@
|
||||
|
||||
<p>A vector of values. In case of <code>ab_tradenames</code>, if <code>x</code> is of length one, a vector will be returned. Otherwise a <code><a href='https://www.rdocumentation.org/packages/base/topics/list'>list</a></code>, with <code>x</code> as names.</p>
|
||||
|
||||
<h2 class="hasAnchor" id="read-more-on-our-website-"><a class="anchor" href="#read-more-on-our-website-"></a>Read more on our website!</h2>
|
||||
|
||||
|
||||
<p><img src='figures/logo.png' height=40px style=margin-bottom:5px /> <br />
|
||||
On our website <a href='https://msberends.gitlab.io/AMR'>https://msberends.gitlab.io/AMR</a> you can find <a href='https://msberends.gitlab.io/AMR/articles/AMR.html'>a omprehensive tutorial</a> about how to conduct AMR analysis and find <a href='https://msberends.gitlab.io/AMR/reference'>the complete documentation of all functions</a>, which reads a lot easier than in R.</p>
|
||||
|
||||
<h2 class="hasAnchor" id="see-also"><a class="anchor" href="#see-also"></a>See also</h2>
|
||||
|
||||
<div class='dont-index'><p><code><a href='antibiotics.html'>antibiotics</a></code></p></div>
|
||||
|
||||
|
||||
<h2 class="hasAnchor" id="examples"><a class="anchor" href="#examples"></a>Examples</h2>
|
||||
<pre class="examples"><div class='input'><span class='fu'>ab_atc</span>(<span class='st'>"amcl"</span>) <span class='co'># J01CR02</span></div><div class='output co'>#> [1] "J01CR02"</div><div class='input'><span class='fu'>ab_name</span>(<span class='st'>"amcl"</span>) <span class='co'># Amoxicillin and beta-lactamase inhibitor</span></div><div class='output co'>#> [1] "Amoxicillin and beta-lactamase inhibitor"</div><div class='input'><span class='fu'>ab_name</span>(<span class='st'>"amcl"</span>, <span class='st'>"nl"</span>) <span class='co'># Amoxicilline met enzymremmer</span></div><div class='output co'>#> [1] "Amoxicilline met enzymremmer"</div><div class='input'><span class='fu'>ab_trivial_nl</span>(<span class='st'>"amcl"</span>) <span class='co'># Amoxicilline/clavulaanzuur</span></div><div class='output co'>#> [1] "Amoxicilline/clavulaanzuur"</div><div class='input'><span class='fu'>ab_certe</span>(<span class='st'>"amcl"</span>) <span class='co'># amcl</span></div><div class='output co'>#> [1] "amcl"</div><div class='input'><span class='fu'>ab_umcg</span>(<span class='st'>"amcl"</span>) <span class='co'># AMCL</span></div><div class='output co'>#> [1] "AMCL"</div></pre>
|
||||
<pre class="examples"><span class='co'># NOT RUN {</span>
|
||||
<span class='fu'>ab_atc</span>(<span class='st'>"amcl"</span>) <span class='co'># J01CR02</span>
|
||||
<span class='fu'>ab_name</span>(<span class='st'>"amcl"</span>) <span class='co'># Amoxicillin and beta-lactamase inhibitor</span>
|
||||
<span class='fu'>ab_name</span>(<span class='st'>"amcl"</span>, <span class='st'>"nl"</span>) <span class='co'># Amoxicilline met enzymremmer</span>
|
||||
<span class='fu'>ab_trivial_nl</span>(<span class='st'>"amcl"</span>) <span class='co'># Amoxicilline/clavulaanzuur</span>
|
||||
<span class='fu'>ab_certe</span>(<span class='st'>"amcl"</span>) <span class='co'># amcl</span>
|
||||
<span class='fu'>ab_umcg</span>(<span class='st'>"amcl"</span>) <span class='co'># AMCL</span>
|
||||
<span class='co'># }</span></pre>
|
||||
</div>
|
||||
<div class="col-md-3 hidden-xs hidden-sm" id="sidebar">
|
||||
<h2>Contents</h2>
|
||||
@ -219,6 +285,8 @@
|
||||
|
||||
<li><a href="#value">Value</a></li>
|
||||
|
||||
<li><a href="#read-more-on-our-website-">Read more on our website!</a></li>
|
||||
|
||||
<li><a href="#see-also">See also</a></li>
|
||||
|
||||
<li><a href="#examples">Examples</a></li>
|
||||
|
Reference in New Issue
Block a user