big website update, licence txt update

docs/reference/ab_property.html

@@ -49,7 +49,7 @@
 
 <meta property="og:description" content="Use these functions to return a specific property of an antibiotic from the antibiotics data set, based on their ATC code. Get such a code with as.atc." />
 
-<meta property="og:image" content="https://msberends.gitlab.io/logo.png" />
+<meta property="og:image" content="https://msberends.gitlab.io/AMR/logo.png" />
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@@ -80,7 +80,7 @@
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         <a class="navbar-link" href="../index.html">AMR (for R)</a>
-        <span class="version label label-default" data-toggle="tooltip" data-placement="bottom" title="Released version">0.5.0.9008</span>
+        <span class="version label label-default" data-toggle="tooltip" data-placement="bottom" title="Released version">0.5.0.9009</span>
       </span>
     </div>
 
@@ -93,12 +93,65 @@
     Home
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 </li>
-<li>
-  <a href="../articles/AMR.html">
-    <span class="fa fa-directions"></span>
+<li class="dropdown">
+  <a href="#" class="dropdown-toggle" data-toggle="dropdown" role="button" aria-expanded="false">
+    <span class="fa fa-question-circle"></span>
      
-    Get Started
+    How to
+     
+    <span class="caret"></span>
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+  <ul class="dropdown-menu" role="menu">
+    <li>
+      <a href="../articles/AMR.html">
+        <span class="fa fa-directions"></span>
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+        Conduct AMR analysis
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+    <li>
+      <a href="../articles/Predict.html">
+        <span class="fa fa-dice"></span>
+         
+        Predict antimicrobial resistance
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+    <li>
+      <a href="../articles/EUCAST.html">
+        <span class="fa fa-exchange-alt"></span>
+         
+        Apply EUCAST rules
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+    </li>
+    <li>
+      <a href="../articles/mo_property.html">
+        <span class="fa fa-bug"></span>
+         
+        Get properties of a microorganism
+      </a>
+    </li>
+    <li>
+      <a href="../articles/ab_property.html">
+        <span class="fa fa-capsules"></span>
+         
+        Get properties of an antibiotic
+      </a>
+    </li>
+    <li>
+      <a href="../articles/freq.html">
+        <span class="fa fa-sort-amount-down"></span>
+         
+        Create frequency tables
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+      <a href="../articles/G_test.html">
+        <span class="fa fa-clipboard-check"></span>
+         
+        Use the G-test
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@@ -121,17 +174,17 @@
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@@ -204,13 +257,26 @@
 
     <p>A vector of values. In case of <code>ab_tradenames</code>, if <code>x</code> is of length one, a vector will be returned. Otherwise a <code><a href='https://www.rdocumentation.org/packages/base/topics/list'>list</a></code>, with <code>x</code> as names.</p>
     
+    <h2 class="hasAnchor" id="read-more-on-our-website-"><a class="anchor" href="#read-more-on-our-website-"></a>Read more on our website!</h2>
+
+    
+    <p><img src='figures/logo.png' height=40px style=margin-bottom:5px /> <br />
+On our website <a href='https://msberends.gitlab.io/AMR'>https://msberends.gitlab.io/AMR</a> you can find <a href='https://msberends.gitlab.io/AMR/articles/AMR.html'>a omprehensive tutorial</a> about how to conduct AMR analysis and find <a href='https://msberends.gitlab.io/AMR/reference'>the complete documentation of all functions</a>, which reads a lot easier than in R.</p>
+    
     <h2 class="hasAnchor" id="see-also"><a class="anchor" href="#see-also"></a>See also</h2>
 
     <div class='dont-index'><p><code><a href='antibiotics.html'>antibiotics</a></code></p></div>
     
 
     <h2 class="hasAnchor" id="examples"><a class="anchor" href="#examples"></a>Examples</h2>
-    <pre class="examples"><div class='input'><span class='fu'>ab_atc</span>(<span class='st'>"amcl"</span>)         <span class='co'># J01CR02</span></div><div class='output co'>#&gt; [1] "J01CR02"</div><div class='input'><span class='fu'>ab_name</span>(<span class='st'>"amcl"</span>)        <span class='co'># Amoxicillin and beta-lactamase inhibitor</span></div><div class='output co'>#&gt; [1] "Amoxicillin and beta-lactamase inhibitor"</div><div class='input'><span class='fu'>ab_name</span>(<span class='st'>"amcl"</span>, <span class='st'>"nl"</span>)  <span class='co'># Amoxicilline met enzymremmer</span></div><div class='output co'>#&gt; [1] "Amoxicilline met enzymremmer"</div><div class='input'><span class='fu'>ab_trivial_nl</span>(<span class='st'>"amcl"</span>)  <span class='co'># Amoxicilline/clavulaanzuur</span></div><div class='output co'>#&gt; [1] "Amoxicilline/clavulaanzuur"</div><div class='input'><span class='fu'>ab_certe</span>(<span class='st'>"amcl"</span>)       <span class='co'># amcl</span></div><div class='output co'>#&gt; [1] "amcl"</div><div class='input'><span class='fu'>ab_umcg</span>(<span class='st'>"amcl"</span>)        <span class='co'># AMCL</span></div><div class='output co'>#&gt; [1] "AMCL"</div></pre>
+    <pre class="examples"><span class='co'># NOT RUN {</span>
+<span class='fu'>ab_atc</span>(<span class='st'>"amcl"</span>)         <span class='co'># J01CR02</span>
+<span class='fu'>ab_name</span>(<span class='st'>"amcl"</span>)        <span class='co'># Amoxicillin and beta-lactamase inhibitor</span>
+<span class='fu'>ab_name</span>(<span class='st'>"amcl"</span>, <span class='st'>"nl"</span>)  <span class='co'># Amoxicilline met enzymremmer</span>
+<span class='fu'>ab_trivial_nl</span>(<span class='st'>"amcl"</span>)  <span class='co'># Amoxicilline/clavulaanzuur</span>
+<span class='fu'>ab_certe</span>(<span class='st'>"amcl"</span>)       <span class='co'># amcl</span>
+<span class='fu'>ab_umcg</span>(<span class='st'>"amcl"</span>)        <span class='co'># AMCL</span>
+<span class='co'># }</span></pre>
   </div>
   <div class="col-md-3 hidden-xs hidden-sm" id="sidebar">
     <h2>Contents</h2>
@@ -219,6 +285,8 @@
       
       <li><a href="#value">Value</a></li>
 
+      <li><a href="#read-more-on-our-website-">Read more on our website!</a></li>
+
       <li><a href="#see-also">See also</a></li>
       
       <li><a href="#examples">Examples</a></li>