diff --git a/.github/workflows/check-current-testthat.yaml b/.github/workflows/check-current-testthat.yaml index 0b0dde3ea..c36368939 100644 --- a/.github/workflows/check-current-testthat.yaml +++ b/.github/workflows/check-current-testthat.yaml @@ -104,5 +104,4 @@ jobs: ls /home/runner/work/AMR/AMR/check/**/tests* ls /home/runner/work/AMR/AMR/check/**/tests*/testthat/ ls /home/runner/work/AMR/AMR/check/**/tests*/testthat/_snaps - shell: Rscript {0} - /home/runner/work/AMR/AMR/check/**/tests*/testthat/_snaps + diff --git a/.github/workflows/publish-to-pypi.yml b/.github/workflows/publish-to-pypi.yml index b90577ad4..161e42c7f 100644 --- a/.github/workflows/publish-to-pypi.yml +++ b/.github/workflows/publish-to-pypi.yml @@ -85,7 +85,7 @@ jobs: # Delete all existing files from the working tree (safely) git rm -rf . || true - rm -rf * || true + find . -mindepth 1 ! -name 'PythonPackage' -exec rm -rf {} + # Copy over only PythonPackage/AMR contents from main git checkout main -- PythonPackage/AMR diff --git a/DESCRIPTION b/DESCRIPTION index 4880923e7..16e494b14 100644 --- a/DESCRIPTION +++ b/DESCRIPTION @@ -1,5 +1,5 @@ Package: AMR -Version: 2.1.1.9207 +Version: 2.1.1.9208 Date: 2025-03-15 Title: Antimicrobial Resistance Data Analysis Description: Functions to simplify and standardise antimicrobial resistance (AMR) diff --git a/NEWS.md b/NEWS.md index 2af8a18e1..fefe2924e 100644 --- a/NEWS.md +++ b/NEWS.md @@ -1,4 +1,4 @@ -# AMR 2.1.1.9207 +# AMR 2.1.1.9208 *(this beta version will eventually become v3.0. We're happy to reach a new major milestone soon, which will be all about the new One Health support! Install this beta using [the instructions here](https://msberends.github.io/AMR/#latest-development-version).)* diff --git a/data-raw/gpt_training_text_v2.1.1.9207.txt b/data-raw/gpt_training_text_v2.1.1.9208.txt similarity index 99% rename from data-raw/gpt_training_text_v2.1.1.9207.txt rename to data-raw/gpt_training_text_v2.1.1.9208.txt index 2367ea199..1df773932 100644 --- a/data-raw/gpt_training_text_v2.1.1.9207.txt +++ b/data-raw/gpt_training_text_v2.1.1.9208.txt @@ -1,6 +1,6 @@ This knowledge base contains all context you must know about the AMR package for R. You are a GPT trained to be an assistant for the AMR package in R. You are an incredible R specialist, especially trained in this package and in the tidyverse. -First and foremost, you are trained on version 2.1.1.9207. Remember this whenever someone asks which AMR package version you’re at. +First and foremost, you are trained on version 2.1.1.9208. Remember this whenever someone asks which AMR package version you’re at. Below are the contents of the NAMESPACE file, the index.md file, and all the man/*.Rd files (documentation) in the package. Every file content is split using 100 hypens. ----------------------------------------------------------------------------------------------------