From 6eb417125cc256d2959cde00e8f4496e689a5aed Mon Sep 17 00:00:00 2001 From: github-actions <41898282+github-actions[bot]@users.noreply.github.com> Date: Fri, 19 Apr 2024 08:24:46 +0000 Subject: [PATCH] cli-154-2226 --- 404.html | 4 +- LICENSE-text.html | 4 +- articles/AMR.html | 12 ++--- articles/EUCAST.html | 4 +- articles/MDR.html | 60 +++++++++++----------- articles/PCA.html | 4 +- articles/WHONET.html | 4 +- articles/datasets.html | 6 +-- articles/index.html | 16 +++--- articles/other_pkg.html | 4 +- articles/resistance_predict.html | 4 +- articles/welcome_to_AMR.html | 4 +- authors.html | 4 +- index.html | 14 ++--- news/index.html | 21 ++++---- pkgdown.yml | 10 ++-- reference/AMR-options.html | 4 +- reference/AMR.html | 4 +- reference/Rplot005.png | Bin 8352 -> 13381 bytes reference/Rplot006.png | Bin 9042 -> 13059 bytes reference/Rplot007.png | Bin 9792 -> 8352 bytes reference/Rplot008.png | Bin 9232 -> 9042 bytes reference/Rplot009.png | Bin 20259 -> 9792 bytes reference/Rplot010.png | Bin 18185 -> 9232 bytes reference/Rplot011.png | Bin 8222 -> 20259 bytes reference/Rplot012.png | Bin 0 -> 18185 bytes reference/Rplot013.png | Bin 0 -> 8222 bytes reference/WHOCC.html | 4 +- reference/WHONET.html | 4 +- reference/ab_from_text.html | 4 +- reference/ab_property.html | 4 +- reference/add_custom_antimicrobials.html | 4 +- reference/add_custom_microorganisms.html | 7 ++- reference/age.html | 24 ++++----- reference/age_groups.html | 4 +- reference/antibiogram.html | 4 +- reference/antibiotic_class_selectors.html | 4 +- reference/antibiotics.html | 4 +- reference/as.ab.html | 4 +- reference/as.av.html | 4 +- reference/as.disk.html | 4 +- reference/as.mic-1.png | Bin 75979 -> 21698 bytes reference/as.mic-2.png | Bin 74640 -> 34827 bytes reference/as.mic-3.png | Bin 0 -> 75979 bytes reference/as.mic-4.png | Bin 0 -> 74640 bytes reference/as.mic.html | 12 ++--- reference/as.mo.html | 4 +- reference/as.sir.html | 30 +++++------ reference/atc_online.html | 4 +- reference/av_from_text.html | 4 +- reference/av_property.html | 4 +- reference/availability.html | 4 +- reference/bug_drug_combinations.html | 4 +- reference/clinical_breakpoints.html | 4 +- reference/count.html | 4 +- reference/custom_eucast_rules.html | 4 +- reference/dosage.html | 4 +- reference/eucast_rules.html | 4 +- reference/example_isolates.html | 4 +- reference/example_isolates_unclean.html | 4 +- reference/first_isolate.html | 4 +- reference/g.test.html | 4 +- reference/get_episode.html | 4 +- reference/ggplot_pca.html | 4 +- reference/ggplot_sir.html | 4 +- reference/guess_ab_col.html | 4 +- reference/index.html | 6 +-- reference/intrinsic_resistant.html | 4 +- reference/italicise_taxonomy.html | 4 +- reference/join.html | 4 +- reference/key_antimicrobials.html | 4 +- reference/kurtosis.html | 4 +- reference/like.html | 4 +- reference/mdro.html | 4 +- reference/mean_amr_distance.html | 4 +- reference/microorganisms.codes.html | 7 ++- reference/microorganisms.groups.html | 4 +- reference/microorganisms.html | 4 +- reference/mo_matching_score.html | 4 +- reference/mo_property.html | 40 ++++++++++++++- reference/mo_source.html | 4 +- reference/pca.html | 4 +- reference/plot-1.png | Bin 26423 -> 26360 bytes reference/plot-10.png | Bin 56797 -> 27064 bytes reference/plot-11.png | Bin 25775 -> 64884 bytes reference/plot-12.png | Bin 0 -> 56797 bytes reference/plot-13.png | Bin 0 -> 25775 bytes reference/plot-2.png | Bin 28116 -> 26423 bytes reference/plot-3.png | Bin 40137 -> 28116 bytes reference/plot-4.png | Bin 38447 -> 40277 bytes reference/plot-5.png | Bin 25157 -> 40137 bytes reference/plot-6.png | Bin 26567 -> 38447 bytes reference/plot-7.png | Bin 29775 -> 25157 bytes reference/plot-8.png | Bin 27064 -> 26567 bytes reference/plot-9.png | Bin 64884 -> 29775 bytes reference/plot.html | 32 ++++++------ reference/proportion.html | 4 +- reference/random.html | 4 +- reference/resistance_predict.html | 4 +- reference/skewness.html | 4 +- reference/translate.html | 4 +- search.json | 2 +- 102 files changed, 290 insertions(+), 249 deletions(-) create mode 100644 reference/Rplot012.png create mode 100644 reference/Rplot013.png create mode 100644 reference/as.mic-3.png create mode 100644 reference/as.mic-4.png create mode 100644 reference/plot-12.png create mode 100644 reference/plot-13.png diff --git a/404.html b/404.html index 4794c085..11558b85 100644 --- a/404.html +++ b/404.html @@ -33,11 +33,11 @@ Skip to contents -