P281424/AMR
1
0
Fork 0
mirror of https://github.com/msberends/AMR.git synced 2025-08-20 02:32:27 +02:00
Code Releases Activity

add tests using testthat

Browse Source
This commit is contained in:
dr. M.S. (Matthijs) Berends
2018-03-27 17:43:42 +02:00
parent c26839b08e
commit 6f7730dcaa
19 changed files with 231 additions and 17 deletions
Download Patch File Download Diff File Expand all files Collapse all files

31
tests/testthat/test-eucast.R Normal file
View File

@@ -0,0 +1,31 @@
context("EUCAST.R")
test_that("EUCAST rules work", {
a <- data.frame(bactid = c("KLEPNE", # Klebsiella pneumoniae
"PSEAER", # Pseudomonas aeruginosa
"ENTAER"), # Enterobacter aerogenes
amox = "-", # Amoxicillin
stringsAsFactors = FALSE)
b <- data.frame(bactid = c("KLEPNE", # Klebsiella pneumoniae
"PSEAER", # Pseudomonas aeruginosa
"ENTAER"), # Enterobacter aerogenes
amox = "R", # Amoxicillin
stringsAsFactors = FALSE)
expect_equal(EUCAST_rules(a, info = FALSE), b)
expect_equal(interpretive_reading(a, info = FALSE), b)
a <- data.frame(bactid = c("STAAUR", # Staphylococcus aureus
"STCGRA"), # Streptococcus pyognenes (Lancefield Group A)
coli = "-", # Colistin
stringsAsFactors = FALSE)
b <- data.frame(bactid = c("STAAUR", # Staphylococcus aureus
"STCGRA"), # Streptococcus pyognenes (Lancefield Group A)
coli = "R", # Colistin
stringsAsFactors = FALSE)
expect_equal(EUCAST_rules(a, info = FALSE), b)
})
test_that("MO properties work", {
expect_equal(mo_property("ESCCOL"), "Escherichia coli")
expect_equal(mo_property("STAAUR"), "Staphylococcus aureus")
})