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first isolates

This commit is contained in:
2018-02-26 14:06:31 +01:00
parent d36a391747
commit 6fa05fe33b
3 changed files with 18 additions and 15 deletions

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@ -4,7 +4,7 @@
\alias{first_isolate}
\title{Determine first (weighted) isolates}
\usage{
first_isolate(tbl, col_date, col_patid, col_genus, col_species,
first_isolate(tbl, col_date, col_patient_id, col_genus, col_species,
col_testcode = NA, col_specimen, col_icu, col_keyantibiotics = NA,
episode_days = 365, testcodes_exclude = "", icu_exclude = FALSE,
filter_specimen = NA, output_logical = TRUE, ignore_I = TRUE,
@ -15,7 +15,7 @@ first_isolate(tbl, col_date, col_patid, col_genus, col_species,
\item{col_date}{column name of the result date (or date that is was received on the lab)}
\item{col_patid}{column name of the unique IDs of the patients}
\item{col_patient_id}{column name of the unique IDs of the patients}
\item{col_genus}{column name of the genus of the microorganisms}