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first isolates
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@ -4,7 +4,7 @@
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\alias{first_isolate}
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\title{Determine first (weighted) isolates}
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\usage{
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first_isolate(tbl, col_date, col_patid, col_genus, col_species,
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first_isolate(tbl, col_date, col_patient_id, col_genus, col_species,
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col_testcode = NA, col_specimen, col_icu, col_keyantibiotics = NA,
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episode_days = 365, testcodes_exclude = "", icu_exclude = FALSE,
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filter_specimen = NA, output_logical = TRUE, ignore_I = TRUE,
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@ -15,7 +15,7 @@ first_isolate(tbl, col_date, col_patid, col_genus, col_species,
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\item{col_date}{column name of the result date (or date that is was received on the lab)}
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\item{col_patid}{column name of the unique IDs of the patients}
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\item{col_patient_id}{column name of the unique IDs of the patients}
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\item{col_genus}{column name of the genus of the microorganisms}
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