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@ -178,42 +178,43 @@
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<h2 id="ref-examples">Examples<a class="anchor" aria-label="anchor" href="#ref-examples"></a></h2>
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<div class="sourceCode"><pre class="sourceCode r"><code><span class="r-in"><span><span class="fu">random_mic</span><span class="op">(</span><span class="fl">25</span><span class="op">)</span></span></span>
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<span class="r-out co"><span class="r-pr">#></span> Class 'mic'</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 8 >=128 0.025 2 4 0.01 1 1 0.125 0.002 0.005 0.005</span>
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<span class="r-out co"><span class="r-pr">#></span> [13] 16 0.001 0.025 2 0.25 0.5 0.025 1 4 32 0.125 8 </span>
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<span class="r-out co"><span class="r-pr">#></span> [25] 64 </span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 8 64 1 128 0.25 <=0.001 0.25 0.01 0.025 </span>
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<span class="r-out co"><span class="r-pr">#></span> [10] 128 <=0.001 128 >=256 2 0.025 8 >=256 0.002 </span>
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<span class="r-out co"><span class="r-pr">#></span> [19] 1 0.5 0.25 2 <=0.001 1 2 </span>
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<span class="r-in"><span><span class="fu">random_disk</span><span class="op">(</span><span class="fl">25</span><span class="op">)</span></span></span>
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<span class="r-out co"><span class="r-pr">#></span> Class 'disk'</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 44 7 42 29 31 9 22 11 14 45 33 7 45 44 6 46 6 14 48 7 41 34 44 6 43</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 7 18 38 42 43 47 45 10 45 24 17 15 24 45 26 23 44 50 45 50 19 28 25 47 11</span>
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<span class="r-in"><span><span class="fu">random_rsi</span><span class="op">(</span><span class="fl">25</span><span class="op">)</span></span></span>
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<span class="r-out co"><span class="r-pr">#></span> Class 'rsi'</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] S S S R I S R S I R R I I R R S I R S R R I I S I</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] R S R I I R I R R R I R I I S I I S I R I R R I S</span>
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<span class="r-in"><span></span></span>
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<span class="r-in"><span><span class="co"># \donttest{</span></span></span>
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<span class="r-in"><span><span class="co"># make the random generation more realistic by setting a bug and/or drug:</span></span></span>
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<span class="r-in"><span><span class="fu">random_mic</span><span class="op">(</span><span class="fl">25</span>, <span class="st">"Klebsiella pneumoniae"</span><span class="op">)</span> <span class="co"># range 0.0625-64</span></span></span>
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<span class="r-out co"><span class="r-pr">#></span> Class 'mic'</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 2 0.25 2 0.5 256 2 1 16 0.0625 </span>
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<span class="r-out co"><span class="r-pr">#></span> [10] 0.005 <=0.001 32 16 256 4 0.005 0.0625 2 </span>
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<span class="r-out co"><span class="r-pr">#></span> [19] 4 128 1 8 0.0625 0.125 0.0625 </span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 0.025 0.001 2 0.5 8 0.01 0.005 32 256 4 </span>
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<span class="r-out co"><span class="r-pr">#></span> [11] 0.025 0.025 0.025 0.002 0.25 4 1 0.0625 0.025 0.0625</span>
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<span class="r-out co"><span class="r-pr">#></span> [21] 2 8 0.002 0.5 16 </span>
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<span class="r-in"><span><span class="fu">random_mic</span><span class="op">(</span><span class="fl">25</span>, <span class="st">"Klebsiella pneumoniae"</span>, <span class="st">"meropenem"</span><span class="op">)</span> <span class="co"># range 0.0625-16</span></span></span>
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<span class="r-out co"><span class="r-pr">#></span> Class 'mic'</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 0.5 4 16 0.5 0.5 1 16 16 2 32 16 4 0.5 1 1 1 4 16 1 </span>
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<span class="r-out co"><span class="r-pr">#></span> [20] 16 8 8 0.5 16 8 </span>
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<span class="r-out co"><span class="r-pr">#></span> [1] >=64 32 1 <=0.5 16 1 16 2 1 1 32 2 </span>
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<span class="r-out co"><span class="r-pr">#></span> [13] <=0.5 2 32 2 8 4 16 32 2 1 4 1 </span>
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<span class="r-out co"><span class="r-pr">#></span> [25] 8 </span>
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<span class="r-in"><span><span class="fu">random_mic</span><span class="op">(</span><span class="fl">25</span>, <span class="st">"Streptococcus pneumoniae"</span>, <span class="st">"meropenem"</span><span class="op">)</span> <span class="co"># range 0.0625-4</span></span></span>
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<span class="r-out co"><span class="r-pr">#></span> Class 'mic'</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] >=16 >=16 2 <=0.125 >=16 2 1 <=0.125 1 </span>
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<span class="r-out co"><span class="r-pr">#></span> [10] 8 4 4 0.25 0.5 2 2 4 8 </span>
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<span class="r-out co"><span class="r-pr">#></span> [19] 0.25 8 1 8 2 0.25 0.25 </span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 0.125 >=4 0.5 1 1 0.5 1 0.125 0.125 0.25 0.125 1 </span>
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<span class="r-out co"><span class="r-pr">#></span> [13] 0.25 0.125 0.5 0.5 0.125 >=4 >=4 2 >=4 0.5 2 1 </span>
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<span class="r-out co"><span class="r-pr">#></span> [25] 2 </span>
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<span class="r-in"><span></span></span>
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<span class="r-in"><span><span class="fu">random_disk</span><span class="op">(</span><span class="fl">25</span>, <span class="st">"Klebsiella pneumoniae"</span><span class="op">)</span> <span class="co"># range 8-50</span></span></span>
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<span class="r-out co"><span class="r-pr">#></span> Class 'disk'</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 38 45 43 20 45 28 12 21 15 46 35 46 45 25 18 16 47 40 35 36 14 21 24 25 8</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 42 28 19 47 45 39 48 47 43 30 43 37 43 34 16 45 36 22 26 25 11 28 17 11 41</span>
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<span class="r-in"><span><span class="fu">random_disk</span><span class="op">(</span><span class="fl">25</span>, <span class="st">"Klebsiella pneumoniae"</span>, <span class="st">"ampicillin"</span><span class="op">)</span> <span class="co"># range 11-17</span></span></span>
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<span class="r-out co"><span class="r-pr">#></span> Class 'disk'</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 15 13 16 17 17 13 15 17 11 17 16 15 11 13 15 11 11 13 13 11 13 11 15 16 17</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 13 16 12 16 14 12 15 14 12 11 13 16 12 14 16 12 13 12 17 16 11 14 12 13 15</span>
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<span class="r-in"><span><span class="fu">random_disk</span><span class="op">(</span><span class="fl">25</span>, <span class="st">"Streptococcus pneumoniae"</span>, <span class="st">"ampicillin"</span><span class="op">)</span> <span class="co"># range 12-27</span></span></span>
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<span class="r-out co"><span class="r-pr">#></span> Class 'disk'</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 24 24 17 16 26 16 22 20 26 19 24 15 22 21 23 15 17 21 22 16 21 24 20 17 18</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 25 18 19 19 27 25 18 24 27 23 18 17 16 27 26 15 25 26 24 26 15 17 26 20 16</span>
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<span class="r-in"><span><span class="co"># }</span></span></span>
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</code></pre></div>
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</div>
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