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(v1.6.0.9001) support Inf for episodes

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dr. M.S. (Matthijs) Berends
2021-04-12 12:35:13 +02:00
parent 7a3139f7cc
commit 6ff5448192
29 changed files with 144 additions and 104 deletions
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docs/news/index.html
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@ -81,7 +81,7 @@
</button>
<span class="navbar-brand">
<a class="navbar-link" href="../index.html">AMR (for R)</a>
<span class="version label label-default" data-toggle="tooltip" data-placement="bottom" title="Latest development version">1.6.0.9000</span>
<span class="version label label-default" data-toggle="tooltip" data-placement="bottom" title="Latest development version">1.6.0.9001</span>
</span>
</div>
@ -236,13 +236,13 @@
<small>Source: <a href='https://github.com/msberends/AMR/blob/master/NEWS.md'><code>NEWS.md</code></a></small>
</div>
<div id="amr-1609000" class="section level1">
<h1 class="page-header" data-toc-text="1.6.0.9000">
<a href="#amr-1609000" class="anchor"></a>AMR 1.6.0.9000<small> Unreleased </small>
<div id="amr-1609001" class="section level1">
<h1 class="page-header" data-toc-text="1.6.0.9001">
<a href="#amr-1609001" class="anchor"></a>AMR 1.6.0.9001<small> Unreleased </small>
</h1>
<div id="last-updated-7-april-2021" class="section level2">
<div id="last-updated-12-april-2021" class="section level2">
<h2 class="hasAnchor">
<a href="#last-updated-7-april-2021" class="anchor"></a><small>Last updated: 7 April 2021</small>
<a href="#last-updated-12-april-2021" class="anchor"></a><small>Last updated: 12 April 2021</small>
</h2>
<div id="new" class="section level3">
<h3 class="hasAnchor">
@ -252,6 +252,26 @@
</li>
</ul>
</div>
<div id="changed" class="section level3">
<h3 class="hasAnchor">
<a href="#changed" class="anchor"></a>Changed</h3>
<ul>
<li>Custom MDRO guidelines (<code><a href="../reference/mdro.html">mdro()</a></code>, <code><a href="../reference/mdro.html">custom_mdro_guideline()</a></code>):
<ul>
<li>Custom MDRO guidelines can now be combined with other custom MDRO guidelines using <code><a href="https://rdrr.io/r/base/c.html">c()</a></code>
</li>
<li>Fix for applying the rules; in previous versions, rows were interpreted according to the last matched rule. Now, rows are interpreted according to the first matched rule</li>
</ul>
</li>
<li>Fix for <code><a href="../reference/age_groups.html">age_groups()</a></code> for persons aged zero</li>
<li>The <code>example_isolates</code> data set now contains some (fictitious) zero-year old patients</li>
<li>Fix for minor translation errors</li>
<li>Printing of microbial codes in a <code>data.frame</code> or <code>tibble</code> now gives a warning if the data contains old microbial codes (from a previous AMR package version)</li>
<li>
<code><a href="../reference/first_isolate.html">first_isolate()</a></code> can now take a vector of values for <code>col_keyantibiotics</code> and can have an episode length of <code>Inf</code>
</li>
</ul>
</div>
</div>
</div>
<div id="amr-160" class="section level1">