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@ -38,7 +38,7 @@
<a class="navbar-brand me-2" href="../index.html">AMR (for R)</a>
<small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">1.8.2.9139</small>
<small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">1.8.2.9140</small>
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@ -385,19 +385,19 @@ names or codes, this would have worked exactly the same way:</p>
<div class="sourceCode" id="cb8"><pre class="downlit sourceCode r">
<code class="sourceCode R"><span><span class="fu"><a href="https://rdrr.io/r/utils/head.html" class="external-link">head</a></span><span class="op">(</span><span class="va">my_TB_data</span><span class="op">)</span></span>
<span><span class="co">#&gt; rifampicin isoniazid gatifloxacin ethambutol pyrazinamide moxifloxacin</span></span>
<span><span class="co">#&gt; 1 R S S S I S</span></span>
<span><span class="co">#&gt; 2 I R S R I S</span></span>
<span><span class="co">#&gt; 3 I R R I S R</span></span>
<span><span class="co">#&gt; 4 R R S R S I</span></span>
<span><span class="co">#&gt; 5 S S S S I S</span></span>
<span><span class="co">#&gt; 6 R I I S S I</span></span>
<span><span class="co">#&gt; 1 R I R I I I</span></span>
<span><span class="co">#&gt; 2 I S S S R S</span></span>
<span><span class="co">#&gt; 3 S R R S I S</span></span>
<span><span class="co">#&gt; 4 I S S I I R</span></span>
<span><span class="co">#&gt; 5 R I I I R I</span></span>
<span><span class="co">#&gt; 6 R R I S R S</span></span>
<span><span class="co">#&gt; kanamycin</span></span>
<span><span class="co">#&gt; 1 I</span></span>
<span><span class="co">#&gt; 1 S</span></span>
<span><span class="co">#&gt; 2 I</span></span>
<span><span class="co">#&gt; 3 S</span></span>
<span><span class="co">#&gt; 3 R</span></span>
<span><span class="co">#&gt; 4 S</span></span>
<span><span class="co">#&gt; 5 S</span></span>
<span><span class="co">#&gt; 6 I</span></span></code></pre></div>
<span><span class="co">#&gt; 6 R</span></span></code></pre></div>
<p>We can now add the interpretation of MDR-TB to our data set. You can
use:</p>
<div class="sourceCode" id="cb9"><pre class="downlit sourceCode r">
@ -438,40 +438,40 @@ Unique: 5</p>
<tr class="odd">
<td align="left">1</td>
<td align="left">Mono-resistant</td>
<td align="right">3221</td>
<td align="right">64.42%</td>
<td align="right">3221</td>
<td align="right">64.42%</td>
<td align="right">3142</td>
<td align="right">62.84%</td>
<td align="right">3142</td>
<td align="right">62.84%</td>
</tr>
<tr class="even">
<td align="left">2</td>
<td align="left">Negative</td>
<td align="right">985</td>
<td align="right">19.70%</td>
<td align="right">4206</td>
<td align="right">84.12%</td>
<td align="right">970</td>
<td align="right">19.40%</td>
<td align="right">4112</td>
<td align="right">82.24%</td>
</tr>
<tr class="odd">
<td align="left">3</td>
<td align="left">Multi-drug-resistant</td>
<td align="right">437</td>
<td align="right">8.74%</td>
<td align="right">4643</td>
<td align="right">92.86%</td>
<td align="right">488</td>
<td align="right">9.76%</td>
<td align="right">4600</td>
<td align="right">92.00%</td>
</tr>
<tr class="even">
<td align="left">4</td>
<td align="left">Poly-resistant</td>
<td align="right">252</td>
<td align="right">5.04%</td>
<td align="right">4895</td>
<td align="right">97.90%</td>
<td align="right">263</td>
<td align="right">5.26%</td>
<td align="right">4863</td>
<td align="right">97.26%</td>
</tr>
<tr class="odd">
<td align="left">5</td>
<td align="left">Extensively drug-resistant</td>
<td align="right">105</td>
<td align="right">2.10%</td>
<td align="right">137</td>
<td align="right">2.74%</td>
<td align="right">5000</td>
<td align="right">100.00%</td>
</tr>