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<a class="navbar-brand me-2" href="../index.html">AMR (for R)</a>
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<small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">1.8.2.9139</small>
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<small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">1.8.2.9140</small>
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<button class="navbar-toggler" type="button" data-bs-toggle="collapse" data-bs-target="#navbar" aria-controls="navbar" aria-expanded="false" aria-label="Toggle navigation">
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@ -193,42 +193,44 @@
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<h2 id="ref-examples">Examples<a class="anchor" aria-label="anchor" href="#ref-examples"></a></h2>
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<div class="sourceCode"><pre class="sourceCode r"><code><span class="r-in"><span><span class="fu">random_mic</span><span class="op">(</span><span class="fl">25</span><span class="op">)</span></span></span>
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<span class="r-out co"><span class="r-pr">#></span> Class 'mic'</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] >=256 32 <=0.001 32 1 0.005 0.5 4 0.0625 </span>
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<span class="r-out co"><span class="r-pr">#></span> [10] 128 >=256 >=256 8 0.125 8 0.002 1 0.005 </span>
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<span class="r-out co"><span class="r-pr">#></span> [19] 128 0.25 0.025 8 <=0.001 <=0.001 16 </span>
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<span class="r-out co"><span class="r-pr">#></span> [1] <=0.002 2 0.5 >=128 0.005 0.25 0.01 8 2 </span>
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<span class="r-out co"><span class="r-pr">#></span> [10] 2 32 0.005 0.025 0.25 0.125 16 8 0.01 </span>
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<span class="r-out co"><span class="r-pr">#></span> [19] 0.005 0.025 0.005 0.5 <=0.002 16 0.0625 </span>
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<span class="r-in"><span><span class="fu">random_disk</span><span class="op">(</span><span class="fl">25</span><span class="op">)</span></span></span>
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<span class="r-out co"><span class="r-pr">#></span> Class 'disk'</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 18 7 50 40 43 33 21 21 43 17 40 46 46 9 14 13 27 14 17 18 42 19 19 30 36</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 43 16 27 40 24 42 19 12 41 20 29 19 9 28 46 11 40 47 13 40 9 47 46 50 36</span>
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<span class="r-in"><span><span class="fu">random_sir</span><span class="op">(</span><span class="fl">25</span><span class="op">)</span></span></span>
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<span class="r-out co"><span class="r-pr">#></span> Class 'sir'</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] R R S R S R S S I I I S R I S S R I I R I I S R R</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] I R S S S I R I R I R I R R I S S R S S I I I I S</span>
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<span class="r-in"><span></span></span>
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<span class="r-in"><span><span class="co"># \donttest{</span></span></span>
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<span class="r-in"><span><span class="co"># make the random generation more realistic by setting a bug and/or drug:</span></span></span>
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<span class="r-in"><span><span class="fu">random_mic</span><span class="op">(</span><span class="fl">25</span>, <span class="st">"Klebsiella pneumoniae"</span><span class="op">)</span> <span class="co"># range 0.0625-64</span></span></span>
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<span class="r-out co"><span class="r-pr">#></span> Class 'mic'</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 1 0.25 32 32 0.25 0.002 0.25 16 0.125 </span>
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<span class="r-out co"><span class="r-pr">#></span> [10] 0.5 16 <=0.001 4 2 0.005 0.5 0.025 8 </span>
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<span class="r-out co"><span class="r-pr">#></span> [19] 2 64 32 0.5 0.005 <=0.001 0.0625 </span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 0.125 0.001 8 64 0.025 0.0625 0.025 0.001 0.025 128 </span>
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<span class="r-out co"><span class="r-pr">#></span> [11] 0.25 0.001 64 0.125 0.01 32 64 8 256 0.5 </span>
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<span class="r-out co"><span class="r-pr">#></span> [21] 0.25 0.005 1 32 0.01 </span>
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<span class="r-in"><span><span class="fu">random_mic</span><span class="op">(</span><span class="fl">25</span>, <span class="st">"Klebsiella pneumoniae"</span>, <span class="st">"meropenem"</span><span class="op">)</span> <span class="co"># range 0.0625-16</span></span></span>
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<span class="r-out co"><span class="r-pr">#></span> Class 'mic'</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 1 2 0.25 0.5 1 1 0.5 0.5 0.5 16 1 1 0.5 0.5 1 </span>
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<span class="r-out co"><span class="r-pr">#></span> [16] 16 1 16 0.5 2 4 8 4 1 1 </span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 4 <=0.25 4 4 >=16 1 <=0.25 8 2 8 </span>
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<span class="r-out co"><span class="r-pr">#></span> [11] 8 >=16 2 8 0.5 8 4 <=0.25 0.5 8 </span>
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<span class="r-out co"><span class="r-pr">#></span> [21] 8 >=16 4 8 0.5 </span>
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<span class="r-in"><span><span class="fu">random_mic</span><span class="op">(</span><span class="fl">25</span>, <span class="st">"Streptococcus pneumoniae"</span>, <span class="st">"meropenem"</span><span class="op">)</span> <span class="co"># range 0.0625-4</span></span></span>
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<span class="r-out co"><span class="r-pr">#></span> Class 'mic'</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] <=0.025 1 0.25 <=0.025 0.0625 <=0.025 0.125 >=4 >=4 </span>
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<span class="r-out co"><span class="r-pr">#></span> [10] 1 1 1 1 <=0.025 0.25 1 0.0625 0.25 </span>
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<span class="r-out co"><span class="r-pr">#></span> [19] 0.125 <=0.025 0.125 0.125 >=4 0.25 >=4 </span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 2 2 >=4 0.5 0.5 <=0.0625 1 >=4 </span>
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<span class="r-out co"><span class="r-pr">#></span> [9] 0.5 2 0.5 >=4 0.125 0.25 1 0.125 </span>
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<span class="r-out co"><span class="r-pr">#></span> [17] <=0.0625 2 1 0.125 0.5 0.5 0.25 0.25 </span>
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<span class="r-out co"><span class="r-pr">#></span> [25] 0.25 </span>
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<span class="r-in"><span></span></span>
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<span class="r-in"><span><span class="fu">random_disk</span><span class="op">(</span><span class="fl">25</span>, <span class="st">"Klebsiella pneumoniae"</span><span class="op">)</span> <span class="co"># range 8-50</span></span></span>
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<span class="r-out co"><span class="r-pr">#></span> Class 'disk'</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 47 39 14 30 49 29 13 31 35 41 11 42 18 34 35 22 36 14 48 40 41 46 12 32 34</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 45 41 33 18 10 50 49 47 31 35 22 29 14 39 47 38 24 40 45 43 9 24 50 10 30</span>
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<span class="r-in"><span><span class="fu">random_disk</span><span class="op">(</span><span class="fl">25</span>, <span class="st">"Klebsiella pneumoniae"</span>, <span class="st">"ampicillin"</span><span class="op">)</span> <span class="co"># range 11-17</span></span></span>
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<span class="r-out co"><span class="r-pr">#></span> Class 'disk'</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 13 11 17 11 14 12 13 16 12 13 11 11 15 15 15 17 11 11 16 12 12 16 14 11 17</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 13 14 17 13 16 17 14 15 17 16 14 17 14 12 17 12 14 14 16 13 17 13 15 13 11</span>
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<span class="r-in"><span><span class="fu">random_disk</span><span class="op">(</span><span class="fl">25</span>, <span class="st">"Streptococcus pneumoniae"</span>, <span class="st">"ampicillin"</span><span class="op">)</span> <span class="co"># range 12-27</span></span></span>
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<span class="r-out co"><span class="r-pr">#></span> Class 'disk'</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 15 19 16 23 16 27 15 20 27 21 26 20 20 27 22 26 19 26 19 26 23 23 16 17 24</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 15 15 25 19 21 26 19 22 26 21 26 17 25 21 19 19 20 22 15 19 16 24 19 15 19</span>
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<span class="r-in"><span><span class="co"># }</span></span></span>
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</code></pre></div>
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</div>
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