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(v1.6.0.9008) unlike, bugfix for col_mo naming

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dr. M.S. (Matthijs) Berends
2021-04-23 09:59:36 +02:00
parent c6289c3fc3
commit 70b803dbb6
33 changed files with 269 additions and 137 deletions
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NEWS.md
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# AMR 1.6.0.9007
## <small>Last updated: 20 April 2021</small>
# AMR 1.6.0.9008
## <small>Last updated: 23 April 2021</small>
### New
* Function `custom_eucast_rules()` that brings support for custom AMR rules in `eucast_rules()`
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* Fix for minor translation errors
* Printing of microbial codes in a `data.frame` or `tibble` now gives a warning if the data contains old microbial codes (from a previous AMR package version)
* `first_isolate()` can now take a vector of values for `col_keyantibiotics` and can have an episode length of `Inf`
* `like()` (and `%like%`) now checks if `pattern` is a *valid* regular expression
* Extended the `like()` functions:
* Now checks if `pattern` is a *valid* regular expression
* Added `%unlike%` and `%unlike_case%` (as negations of the existing `%like%` and `%like_case%`). This greatly improves readability:
```r
if (!grepl("EUCAST", guideline)) ...
# same:
if (guideline %unlike% "EUCAST") ...
```
* Altered the RStudio addin, so it now iterates over `%like%` -> `%unlike%` -> `%like_case%` -> `%unlike_case%` if you keep pressing your keyboard shortcut
* Fixed an installation error on R-3.0
* Added `info` argument to `as.mo()` to turn on/off the progress bar
* Fixed a bug that `col_mo` for some functions (esp. `eucast_rules()` and `mdro()`) could not be column names of the `microorganisms` data set as it would throw an error
# AMR 1.6.0