P281424/AMR
1
0
Fork 0
mirror of https://github.com/msberends/AMR.git synced 2025-07-12 19:41:58 +02:00
Code Releases Activity

(v1.6.0.9008) unlike, bugfix for col_mo naming

Browse Source
This commit is contained in:
dr. M.S. (Matthijs) Berends
2021-04-23 09:59:36 +02:00
parent c6289c3fc3
commit 70b803dbb6
33 changed files with 269 additions and 137 deletions
Download Patch File Download Diff File Expand all files Collapse all files

4
data-raw/read_EUCAST.R
View File

@ -136,8 +136,8 @@ read_EUCAST <- function(sheet, file, guideline_name) {
disk_R = ifelse(has_zone_diameters, G, NA_character_)) %>%
filter(!is.na(drug),
!(is.na(MIC_S) & is.na(MIC_R) & is.na(disk_S) & is.na(disk_R)),
!MIC_S %like% "(MIC|S ≤|note)",
!MIC_S %like% "^[-]",
MIC_S %unlike% "(MIC|S ≤|note)",
MIC_S %unlike% "^[-]",
drug != MIC_S,) %>%
mutate(administration = case_when(drug %like% "[( ]oral" ~ "oral",
drug %like% "[( ]iv" ~ "iv",