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(v0.7.1.9055) algorithm improvements

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dr. M.S. (Matthijs) Berends
2019-08-13 16:15:08 +02:00
parent 6c4822164c
commit 7108454ba5
77 changed files with 644 additions and 582 deletions
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3
tests/testthat/test-mo.R
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@ -70,6 +70,9 @@ test_that("as.mo works", {
expect_equal(as.character(as.mo("CoNS")), "B_STPHY_CNS")
expect_equal(as.character(as.mo("CPS")), "B_STPHY_CPS")
expect_equal(as.character(as.mo("CoPS")), "B_STPHY_CPS")
expect_equal(as.character(as.mo("VGS")), "B_STRPT_VIR")
expect_equal(as.character(as.mo("streptococcus milleri")), "B_STRPT_MIL")
expect_equal(as.character(as.mo(c("Gram negative", "Gram positive"))), c("B_GRAMN", "B_GRAMP"))