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.github/workflows/website.yaml

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+# ==================================================================== #
+# TITLE                                                                #
+# Antimicrobial Resistance (AMR) Data Analysis for R                   #
+#                                                                      #
+# SOURCE                                                               #
+# https://github.com/msberends/AMR                                     #
+#                                                                      #
+# LICENCE                                                              #
+# (c) 2018-2022 Berends MS, Luz CF et al.                              #
+# Developed at the University of Groningen, the Netherlands, in        #
+# collaboration with non-profit organisations Certe Medical            #
+# Diagnostics & Advice, and University Medical Center Groningen.       # 
+#                                                                      #
+# This R package is free software; you can freely use and distribute   #
+# it for both personal and commercial purposes under the terms of the  #
+# GNU General Public License version 2.0 (GNU GPL-2), as published by  #
+# the Free Software Foundation.                                        #
+# We created this package for both routine data analysis and academic  #
+# research and it was publicly released in the hope that it will be    #
+# useful, but it comes WITHOUT ANY WARRANTY OR LIABILITY.              #
+#                                                                      #
+# Visit our website for the full manual and a complete tutorial about  #
+# how to conduct AMR data analysis: https://msberends.github.io/AMR/   #
+# ==================================================================== #
+
+# Create a website from the R documentation using pkgdown
+# Git commit and push to the 'gh-pages' branch
+
+on:
+  push:
+    # only on main
+    branches: 'main - REMOVE THIS LATER'
+
+name: Update website
+
+jobs:
+  update-website:
+    runs-on: ubuntu-latest
+    continue-on-error: true
+    steps:
+      # Set up R (current stable version) and developer tools
+      - uses: actions/checkout@v3
+      - uses: r-lib/actions/setup-pandoc@v2
+      - name: Set up R
+        uses: r-lib/actions/setup-r@v2
+        with:
+            r-version: "release"
+            # use RStudio Package Manager (RSPM) to quickly install packages
+            use-public-rspm: true
+      - name: Set up R dependencies
+        uses: r-lib/actions/setup-r-dependencies@v2
+        with:
+          extra-packages: any::pkgdown
+
+      # Send updates to repo using GH Actions bot
+      - name: Create website in separate branch
+        run: |
+          git config user.name "github-actions"
+          git config user.email "41898282+github-actions[bot]@users.noreply.github.com"
+          # Rscript -e 'pkgdown::build_favicons()'
+          Rscript -e 'pkgdown::deploy_to_branch(new_process = FALSE, clean = TRUE, install = TRUE, branch = "gh-pages")'