mirror of
https://github.com/msberends/AMR.git
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fixes
This commit is contained in:
30
.github/workflows/check.yaml
vendored
30
.github/workflows/check.yaml
vendored
@ -37,7 +37,7 @@ name: R-code-check
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jobs:
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R-code-check:
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runs-on: ${{ matrix.config.os }}
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continue-on-error: ${{ matrix.config.allowfail }}
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name: ${{ matrix.config.os }} (R-${{ matrix.config.r }})
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@ -72,14 +72,14 @@ jobs:
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R_REMOTES_NO_ERRORS_FROM_WARNINGS: true
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RSPM: ${{ matrix.config.rspm }}
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R_REPOSITORIES: "https://cran.rstudio.com"
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steps:
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- uses: actions/checkout@v3
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- uses: r-lib/actions/setup-r@v2
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with:
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r-version: ${{ matrix.config.r }}
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- uses: r-lib/actions/setup-pandoc@v2
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- name: Install Linux dependencies
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@ -89,7 +89,7 @@ jobs:
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# as of May 2021: https://sysreqs.r-hub.io/pkg/AMR,R,cleaner,curl,dplyr,ggplot2,knitr,microbenchmark,pillar,readxl,rmarkdown,rstudioapi,rvest,skimr,tidyr,tinytest,xml2,backports,crayon,rlang,vctrs,evaluate,highr,markdown,stringr,yaml,xfun,cli,ellipsis,fansi,lifecycle,utf8,glue,mime,magrittr,stringi,generics,R6,tibble,tidyselect,pkgconfig,purrr,digest,gtable,isoband,MASS,mgcv,scales,withr,nlme,Matrix,farver,labeling,munsell,RColorBrewer,viridisLite,lattice,colorspace,gridtext,Rcpp,RCurl,png,jpeg,bitops,cellranger,progress,rematch,hms,prettyunits,htmltools,jsonlite,tinytex,base64enc,httr,selectr,openssl,askpass,sys,repr,cpp11
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run: |
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sudo apt install -y libssl-dev libxml2-dev libcurl4-openssl-dev
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- name: Restore cached R packages
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# this step will add the step 'Post Restore cached R packages' on a succesful run
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uses: actions/cache@v2
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@ -102,7 +102,7 @@ jobs:
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run: |
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Rscript -e "source('data-raw/_install_deps.R')"
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shell: bash
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- name: Show session info
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if: always()
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run: |
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@ -110,7 +110,7 @@ jobs:
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utils::sessionInfo()
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as.data.frame(utils::installed.packages())[, "Version", drop = FALSE]
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shell: Rscript {0}
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- name: Remove vignettes on R without knitr support
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if: matrix.config.r == '3.0' || matrix.config.r == '3.1' || matrix.config.r == '3.2' || matrix.config.r == '3.3'
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# writing to DESCRIPTION2 and then moving to DESCRIPTION is required for R <= 3.3 as writeLines() cannot overwrite
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@ -151,6 +151,24 @@ jobs:
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find . -name 'tinytest.Rout*' -exec cat '{}' \; || true
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shell: bash
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- name: Show dir
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continue-on-error: true
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if: always()
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run: |
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echo ${GITHUB_WORKSPACE}
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echo "---"
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ls ${GITHUB_WORKSPACE}
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echo "---"
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ls ../${GITHUB_WORKSPACE}
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echo "---"
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ls ../${GITHUB_WORKSPACE}/AMR
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echo "---"
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ls ../${GITHUB_WORKSPACE}/AMR.Rcheck
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echo "---"
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ls ${GITHUB_WORKSPACE}/AMR
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echo "---"
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ls ${GITHUB_WORKSPACE}/AMR.Rcheck
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- name: Upload artifacts
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if: always()
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uses: actions/upload-artifact@v2
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