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(v3.0.0.9003) eucast_rules fix, new tidymodels integration

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dr. M.S. (Matthijs) Berends
2025-06-13 14:03:21 +02:00
parent 3742e9e994
commit 72db2b2562
22 changed files with 760 additions and 107 deletions
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R/data.R
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@ -361,3 +361,15 @@
#' @examples
#' dosage
"dosage"
#' Data Set with `r format(nrow(esbl_isolates), big.mark = " ")` ESBL Isolates
#'
#' A data set containing `r format(nrow(esbl_isolates), big.mark = " ")` microbial isolates with MIC values of common antibiotics and a binary `esbl` column for extended-spectrum beta-lactamase (ESBL) production. This data set contains randomised fictitious data but reflects reality and can be used to practise AMR-related machine learning, e.g., classification modelling with [tidymodels](https://amr-for-r.org/articles/AMR_with_tidymodels.html).
#' @format A [tibble][tibble::tibble] with `r format(nrow(esbl_isolates), big.mark = " ")` observations and `r ncol(esbl_isolates)` variables:
#' - `esbl`\cr Logical indicator if the isolate is ESBL-producing
#' - `genus`\cr Genus of the microorganism
#' - `AMC:COL`\cr MIC values for 17 antimicrobial agents, transformed to class [`mic`] (see [as.mic()])
#' @details See our [tidymodels integration][amr-tidymodels] for an example using this data set.
#' @examples
#' esbl_isolates
"esbl_isolates"