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(v2.1.1.9200) new argument capped_mic_handling, add Search to website

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dr. M.S. (Matthijs) Berends
2025-03-14 17:01:50 +01:00
parent 58d7aa8790
commit 72f2e723fb
17 changed files with 161 additions and 105 deletions
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118
_pkgdown.yml
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@ -65,70 +65,70 @@ home:
structure: [toc, links, authors]
navbar:
title: "AMR (for R)"
left:
- text: "How to"
icon: "fa-question-circle"
menu:
- text: "Conduct AMR Analysis"
icon: "fa-directions"
href: "articles/AMR.html"
- text: "Generate Antibiogram (Trad./Syndromic/WISCA)"
icon: "fa-file-prescription"
href: "reference/antibiogram.html" # reference instead of an article
- text: "Predict Antimicrobial Resistance"
icon: "fa-dice"
href: "articles/resistance_predict.html"
- text: "Download Data Sets for Own Use"
icon: "fa-database"
href: "articles/datasets.html"
- text: "Use AMR for Predictive Modelling (tidymodels)"
icon: "fa-square-root-variable"
href: "articles/AMR_with_tidymodels.html"
- text: "Set User- Or Team-specific Package Settings"
icon: "fa-gear"
href: "reference/AMR-options.html"
- text: "Conduct Principal Component Analysis for AMR"
icon: "fa-compress"
href: "articles/PCA.html"
- text: "Determine Multi-Drug Resistance (MDR)"
icon: "fa-skull-crossbones"
href: "articles/MDR.html"
- text: "Work with WHONET Data"
icon: "fa-globe-americas"
href: "articles/WHONET.html"
- text: "Apply Eucast Rules"
icon: "fa-exchange-alt"
href: "articles/EUCAST.html"
- text: "Get Taxonomy of a Microorganism"
icon: "fa-bug"
href: "reference/mo_property.html" # reference instead of an article
- text: "Get Properties of an Antibiotic Drug"
icon: "fa-capsules"
href: "reference/ab_property.html" # reference instead of an article
- text: "Get Properties of an Antiviral Drug"
icon: "fa-capsules"
href: "reference/av_property.html" # reference instead of an article
- text: "AMR for Python"
icon: "fab fa-python"
href: "articles/AMR_for_Python.html"
- text: "Manual"
icon: "fa-book-open"
href: "reference/index.html"
- text: "Authors"
icon: "fa-users"
href: "authors.html"
structure:
title: "AMR (for R)"
left:
- text: "How to"
icon: "fa-question-circle"
menu:
- text: "Conduct AMR Analysis"
icon: "fa-directions"
href: "articles/AMR.html"
- text: "Generate Antibiogram (Trad./Syndromic/WISCA)"
icon: "fa-file-prescription"
href: "reference/antibiogram.html" # reference instead of an article
- text: "Predict Antimicrobial Resistance"
icon: "fa-dice"
href: "articles/resistance_predict.html"
- text: "Download Data Sets for Own Use"
icon: "fa-database"
href: "articles/datasets.html"
- text: "Use AMR for Predictive Modelling (tidymodels)"
icon: "fa-square-root-variable"
href: "articles/AMR_with_tidymodels.html"
- text: "Set User- Or Team-specific Package Settings"
icon: "fa-gear"
href: "reference/AMR-options.html"
- text: "Conduct Principal Component Analysis for AMR"
icon: "fa-compress"
href: "articles/PCA.html"
- text: "Determine Multi-Drug Resistance (MDR)"
icon: "fa-skull-crossbones"
href: "articles/MDR.html"
- text: "Work with WHONET Data"
icon: "fa-globe-americas"
href: "articles/WHONET.html"
- text: "Apply Eucast Rules"
icon: "fa-exchange-alt"
href: "articles/EUCAST.html"
- text: "Get Taxonomy of a Microorganism"
icon: "fa-bug"
href: "reference/mo_property.html" # reference instead of an article
- text: "Get Properties of an Antibiotic Drug"
icon: "fa-capsules"
href: "reference/ab_property.html" # reference instead of an article
- text: "Get Properties of an Antiviral Drug"
icon: "fa-capsules"
href: "reference/av_property.html" # reference instead of an article
- text: "AMR for Python"
icon: "fab fa-python"
href: "articles/AMR_for_Python.html"
- text: "Manual"
icon: "fa-book-open"
href: "reference/index.html"
- text: "Authors"
icon: "fa-users"
href: "authors.html"
right: [search, amrchangelog, amrgit]
components:
amrchangelog:
icon: fa-newspaper
href: news/index.html
aria-label: Changelog
text: "Changelog"
icon: "fa-newspaper"
href: "news/index.html"
amrgit:
icon: fa-github
href: https://github.com/msberends/AMR"
aria-label: Source Code
text: "Source Code"
icon: "fa-github"
href: "https://github.com/msberends/AMR"
reference:
- title: "Introduction to the package"