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Built site for AMR@3.0.0.9008: d94bdd2

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2025-07-17 15:16:31 +00:00
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commit 758fc341e8
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@@ -30,7 +30,7 @@
<a class="navbar-brand me-2" href="../index.html">AMR (for R)</a>
<small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">3.0.0.9004</small>
<small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">3.0.0.9008</small>
<button class="navbar-toggler" type="button" data-bs-toggle="collapse" data-bs-target="#navbar" aria-controls="navbar" aria-expanded="false" aria-label="Toggle navigation">
@@ -311,6 +311,12 @@ using the included <code><a href="../reference/ggplot_sir.html">ggplot_sir()</a>
<span> <span class="fu"><a href="https://dplyr.tidyverse.org/reference/group_by.html" class="external-link">group_by</a></span><span class="op">(</span><span class="va">Country</span><span class="op">)</span> <span class="op"><a href="https://magrittr.tidyverse.org/reference/pipe.html" class="external-link">%&gt;%</a></span></span>
<span> <span class="fu"><a href="https://dplyr.tidyverse.org/reference/select.html" class="external-link">select</a></span><span class="op">(</span><span class="va">Country</span>, <span class="va">AMP_ND2</span>, <span class="va">AMC_ED20</span>, <span class="va">CAZ_ED10</span>, <span class="va">CIP_ED5</span><span class="op">)</span> <span class="op"><a href="https://magrittr.tidyverse.org/reference/pipe.html" class="external-link">%&gt;%</a></span></span>
<span> <span class="fu"><a href="../reference/ggplot_sir.html">ggplot_sir</a></span><span class="op">(</span>translate_ab <span class="op">=</span> <span class="st">"ab"</span>, facet <span class="op">=</span> <span class="st">"Country"</span>, datalabels <span class="op">=</span> <span class="cn">FALSE</span><span class="op">)</span></span></code></pre></div>
<pre><code><span><span class="co">#&gt; Warning: in <span style="background-color: #EEEEEE;">as.sir()</span>: 394 results in index 'Country' truncated (79%) that were</span></span>
<span><span class="co">#&gt; invalid antimicrobial interpretations: "Belgium", "France", "Germany", and</span></span>
<span><span class="co">#&gt; "The Netherlands"</span></span>
<span><span class="co">#&gt; <span style="color: #0000BB;">Note that </span><span style="color: #0000BB; background-color: #EEEEEE;">sir_calc_df()</span><span style="color: #0000BB;"> will also count dose-dependent susceptibility,</span></span></span>
<span><span class="co"><span style="color: #0000BB;">#&gt; 'SDD', as 'SI' when </span><span style="color: #0000BB; background-color: #EEEEEE;">combine_SI = TRUE</span><span style="color: #0000BB;">. This note will be shown once for</span></span></span>
<span><span class="co"><span style="color: #0000BB;">#&gt; this session.</span></span></span></code></pre>
<p><img src="WHONET_files/figure-html/unnamed-chunk-7-1.png" width="720"></p>
</div>
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