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<a class="navbar-brand me-2" href="../index.html">AMR (for R)</a>
<small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">3.0.0.9004</small>
<small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">3.0.0.9008</small>
<button class="navbar-toggler" type="button" data-bs-toggle="collapse" data-bs-target="#navbar" aria-controls="navbar" aria-expanded="false" aria-label="Toggle navigation">
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</div>
<div class="section level2">
<h2 class="pkg-version" data-toc-text="3.0.0.9004" id="amr-3009004">AMR 3.0.0.9004<a class="anchor" aria-label="anchor" href="#amr-3009004"></a></h2>
<h2 class="pkg-version" data-toc-text="3.0.0.9008" id="amr-3009008">AMR 3.0.0.9008<a class="anchor" aria-label="anchor" href="#amr-3009008"></a></h2>
<p>This is primarily a bugfix release, though we added one nice feature too.</p>
<div class="section level4">
<h4 id="new-3-0-0-9004">New<a class="anchor" aria-label="anchor" href="#new-3-0-0-9004"></a></h4>
<h4 id="new-3-0-0-9008">New<a class="anchor" aria-label="anchor" href="#new-3-0-0-9008"></a></h4>
<ul><li>Integration with the <strong>tidymodels</strong> framework to allow seamless use of MIC and SIR data in modelling pipelines via <code>recipes</code>
<ul><li>
<code><a href="../reference/amr-tidymodels.html">step_mic_log2()</a></code> to transform <code>&lt;mic&gt;</code> columns with log2, and <code><a href="../reference/amr-tidymodels.html">step_sir_numeric()</a></code> to convert <code>&lt;sir&gt;</code> columns to numeric</li>
<li>
<code>tidyselect</code> helpers: <code><a href="../reference/amr-tidymodels.html">all_mic()</a></code>, <code><a href="../reference/amr-tidymodels.html">all_mic_predictors()</a></code>, <code><a href="../reference/amr-tidymodels.html">all_sir()</a></code>, <code><a href="../reference/amr-tidymodels.html">all_sir_predictors()</a></code>
</li>
<li>Enables seamless use of MIC and SIR data in modelling pipelines via <code>recipes</code>
<li>New <code>tidyselect</code> helpers: <code><a href="../reference/amr-tidymodels.html">all_mic()</a></code>, <code><a href="../reference/amr-tidymodels.html">all_mic_predictors()</a></code>, <code><a href="../reference/amr-tidymodels.html">all_sir()</a></code>, <code><a href="../reference/amr-tidymodels.html">all_sir_predictors()</a></code>
</li>
</ul></li>
</ul></div>
<div class="section level4">
<h4 id="changed-3-0-0-9004">Changed<a class="anchor" aria-label="anchor" href="#changed-3-0-0-9004"></a></h4>
<h4 id="changed-3-0-0-9008">Changed<a class="anchor" aria-label="anchor" href="#changed-3-0-0-9008"></a></h4>
<ul><li>Fixed a bug in <code><a href="../reference/antibiogram.html">antibiogram()</a></code> for when no antimicrobials are set</li>
<li>Fixed a bug in <code><a href="../reference/antibiogram.html">antibiogram()</a></code> to allow column names containing the <code>+</code> character (<a href="https://github.com/msberends/AMR/issues/222" class="external-link">#222</a>)</li>
<li>Fixed a bug in <code><a href="../reference/as.ab.html">as.ab()</a></code> for antimicrobial codes with a number in it if they are preceded by a space</li>
<li>Fixed a bug in <code><a href="../reference/eucast_rules.html">eucast_rules()</a></code> for using specific custom rules</li>
<li>Fixed a bug in <code><a href="../reference/as.sir.html">as.sir()</a></code> to allow any tidyselect language (<a href="https://github.com/msberends/AMR/issues/220" class="external-link">#220</a>)</li>
<li>Fixed a bug in <code><a href="../reference/ggplot_sir.html">ggplot_sir()</a></code> when using <code>combine_SI = FALSE</code> (<a href="https://github.com/msberends/AMR/issues/213" class="external-link">#213</a>)</li>
<li>Fixed all plotting to contain a separate colour for SDD (susceptible dose-dependent)</li>
<li>Fixed some specific Dutch translations for antimicrobials</li>
<li>Updated <code><a href="../reference/random.html">random_mic()</a></code> and <code><a href="../reference/random.html">random_disk()</a></code> to set skewedness of the distribution and allow multiple microorganisms</li>
</ul></div>