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new MOs, cleanup

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dr. M.S. (Matthijs) Berends
2018-09-01 21:19:46 +02:00
parent 5965d3c794
commit 75fe4d401f
20 changed files with 166 additions and 179 deletions
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tests/testthat/test-mo.R
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@ -11,6 +11,7 @@ test_that("as.mo works", {
expect_equal(as.character(as.mo(" ESCCOL ")), "ESCCOL")
expect_equal(as.character(as.mo("klpn")), "KLEPNE")
expect_equal(as.character(as.mo("Klebsiella")), "KLE")
expect_equal(as.character(as.mo("K. pneu rhino")), "KLEPNERH") # K. pneumoniae subspp. rhinoscleromatis
expect_equal(as.character(as.mo("coagulase negative")), "STACNS")
expect_equal(as.character(as.mo("P. aer")), "PSEAER") # not Pasteurella aerogenes