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(v2.1.1.9206) update precommit hook

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dr. M.S. (Matthijs) Berends 2025-03-15 16:17:27 +01:00
parent ede1cdfd99
commit 7631e82ae6
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4 changed files with 21 additions and 18 deletions
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2
DESCRIPTION
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@ -1,5 +1,5 @@
Package: AMR
Version: 2.1.1.9205
Version: 2.1.1.9206
Date: 2025-03-15
Title: Antimicrobial Resistance Data Analysis
Description: Functions to simplify and standardise antimicrobial resistance (AMR)

2
NEWS.md
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# AMR 2.1.1.9205
# AMR 2.1.1.9206
*(this beta version will eventually become v3.0. We're happy to reach a new major milestone soon, which will be all about the new One Health support! Install this beta using [the instructions here](https://msberends.github.io/AMR/#latest-development-version).)*

33
data-raw/_pre_commit_checks.R
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@ -626,25 +626,28 @@ suppressMessages(reset_AMR_locale())
devtools::load_all(quiet = TRUE)
suppressMessages(set_AMR_locale("English"))
# Update URLs -------------------------------------------------------------
usethis::ui_info("Checking URLs for redirects")
invisible(urlchecker::url_update("."))
# Style pkg ---------------------------------------------------------------
usethis::ui_info("Styling package")
styler::style_pkg(include_roxygen_examples = FALSE,
exclude_dirs = list.dirs(full.names = FALSE, recursive = FALSE)[!list.dirs(full.names = FALSE, recursive = FALSE) %in% c("R", "tests")])
# Document pkg ------------------------------------------------------------
files_changed <- function(paths = c("R/", "data/")) {
files_changed <- function(paths = "^(R|data)/") {
tryCatch({
changed_files <- system("git diff --name-only", intern = TRUE)
any(changed_files %like% "^(R|data)/")
any(changed_files %like% paths)
}, error = function(e) TRUE)
}
if (interactive()) {
message("Skipping document in interactive mode")
} else if (files_changed()) {
# Update URLs -------------------------------------------------------------
if (files_changed()) {
usethis::ui_info("Checking URLs for redirects")
invisible(urlchecker::url_update("."))
}
# Style pkg ---------------------------------------------------------------
if (files_changed(paths = "^(R|tests)/")) {
sethis::ui_info("Styling package")
styler::style_pkg(include_roxygen_examples = FALSE,
exclude_dirs = list.dirs(full.names = FALSE, recursive = FALSE)[!list.dirs(full.names = FALSE, recursive = FALSE) %in% c("R", "tests")])
}
# Document pkg ------------------------------------------------------------
if (files_changed()) {
usethis::ui_info("Documenting package")
suppressMessages(devtools::document(quiet = TRUE))
}

2
data-raw/gpt_training_text_v2.1.1.9205.txt → data-raw/gpt_training_text_v2.1.1.9206.txt
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This knowledge base contains all context you must know about the AMR package for R. You are a GPT trained to be an assistant for the AMR package in R. You are an incredible R specialist, especially trained in this package and in the tidyverse.
First and foremost, you are trained on version 2.1.1.9205. Remember this whenever someone asks which AMR package version you’re at.
First and foremost, you are trained on version 2.1.1.9206. Remember this whenever someone asks which AMR package version you’re at.
Below are the contents of the file, the file, and all the files (documentation) in the package. Every file content is split using 100 hypens.
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