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move object assignment to AMR_env

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dr. M.S. (Matthijs) Berends
2022-10-14 13:02:50 +02:00
parent dfae4c7e7d
commit 76bcd3528c
18 changed files with 116 additions and 127 deletions
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R/aa_helper_functions.R
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@ -626,7 +626,7 @@ create_eucast_ab_documentation <- function() {
if (paste0("AB_", val) %in% ls(envir = asNamespace("AMR"))) {
# antibiotic group names, as defined in data-raw/_pre_commit_hook.R, such as `CARBAPENEMS`
val <- eval(parse(text = paste0("AB_", val)), envir = asNamespace("AMR"))
} else if (val %in% AB_lookup$ab) {
} else if (val %in% AMR_env$AB_lookup$ab) {
# separate drugs, such as `AMX`
val <- as.ab(val)
} else {