P281424/AMR
1
0
Fork 0
mirror of https://github.com/msberends/AMR.git synced 2025-07-09 06:02:01 +02:00
Code Releases Activity

move object assignment to AMR_env

Browse Source
This commit is contained in:
dr. M.S. (Matthijs) Berends
2022-10-14 13:02:50 +02:00
parent dfae4c7e7d
commit 76bcd3528c
18 changed files with 116 additions and 127 deletions
Download Patch File Download Diff File Expand all files Collapse all files

2
R/mdro.R
View File

@ -326,7 +326,7 @@ mdro <- function(x = NULL,
"No column found as input for `col_mo`, ",
font_bold(paste0("assuming all rows contain ", font_italic("Mycobacterium tuberculosis"), "."))
)
x$mo <- as.mo("Mycobacterium tuberculosis") # consider overkill at all times: MO_lookup[which(MO_lookup$fullname == "Mycobacterium tuberculosis"), "mo", drop = TRUE]
x$mo <- as.mo("Mycobacterium tuberculosis") # consider overkill at all times: AMR_env$MO_lookup[which(AMR_env$MO_lookup$fullname == "Mycobacterium tuberculosis"), "mo", drop = TRUE]
col_mo <- "mo"
}
stop_if(is.null(col_mo), "`col_mo` must be set")