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(v1.7.1.9074) as.mo() improvement, ASCII replacements for unit tests

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dr. M.S. (Matthijs) Berends
2021-12-14 22:39:23 +01:00
parent bd4bb1d72f
commit 76dee66852
33 changed files with 6809 additions and 6787 deletions
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docs/reference/intrinsic_resistant.html
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@ -17,7 +17,7 @@
</button>
<span class="navbar-brand">
<a class="navbar-link" href="../index.html">AMR (for R)</a>
<span class="version label label-default" data-toggle="tooltip" data-placement="bottom" title="Released version">1.7.1.9073</span>
<span class="version label label-default" data-toggle="tooltip" data-placement="bottom" title="Released version">1.7.1.9074</span>
</span>
</div>
@ -188,15 +188,13 @@
<div id="ref-examples">
<h2>Examples</h2>
<div class="sourceCode"><pre class="sourceCode r"><code><span class="fu"><a href="https://rdrr.io/r/base/subset.html" class="external-link">subset</a></span><span class="op">(</span><span class="va">intrinsic_resistant</span>,
<span class="va">antibiotic</span> <span class="op">==</span> <span class="st">"Vancomycin"</span> <span class="op">&amp;</span> <span class="va">microorganism</span> <span class="op"><a href="like.html">%like%</a></span> <span class="st">"Enterococcus"</span><span class="op">)</span><span class="op">$</span><span class="va">microorganism</span>
<span class="co">#&gt; [1] "Enterococcus casseliflavus" "Enterococcus gallinarum"</span>
<span class="co"># \donttest{</span>
<div class="sourceCode"><pre class="sourceCode r"><code><span class="co"># \donttest{</span>
<span class="kw">if</span> <span class="op">(</span><span class="kw"><a href="https://rdrr.io/r/base/library.html" class="external-link">require</a></span><span class="op">(</span><span class="st"><a href="https://dplyr.tidyverse.org" class="external-link">"dplyr"</a></span><span class="op">)</span><span class="op">)</span> <span class="op">{</span>
<span class="va">intrinsic_resistant</span> <span class="op"><a href="https://magrittr.tidyverse.org/reference/pipe.html" class="external-link">%&gt;%</a></span>
<span class="fu"><a href="https://dplyr.tidyverse.org/reference/filter.html" class="external-link">filter</a></span><span class="op">(</span><span class="va">antibiotic</span> <span class="op">==</span> <span class="st">"Vancomycin"</span> <span class="op">&amp;</span> <span class="va">microorganism</span> <span class="op"><a href="like.html">%like%</a></span> <span class="st">"Enterococcus"</span><span class="op">)</span> <span class="op"><a href="https://magrittr.tidyverse.org/reference/pipe.html" class="external-link">%&gt;%</a></span>
<span class="fu"><a href="https://dplyr.tidyverse.org/reference/pull.html" class="external-link">pull</a></span><span class="op">(</span><span class="va">microorganism</span><span class="op">)</span>
<span class="fu"><a href="https://dplyr.tidyverse.org/reference/mutate.html" class="external-link">mutate</a></span><span class="op">(</span>mo <span class="op">=</span> <span class="fu"><a href="mo_property.html">mo_name</a></span><span class="op">(</span><span class="va">mo</span><span class="op">)</span>,
ab <span class="op">=</span> <span class="fu"><a href="ab_property.html">ab_name</a></span><span class="op">(</span><span class="va">mo</span><span class="op">)</span><span class="op">)</span>
<span class="fu"><a href="https://dplyr.tidyverse.org/reference/filter.html" class="external-link">filter</a></span><span class="op">(</span><span class="va">ab</span> <span class="op">==</span> <span class="st">"Vancomycin"</span> <span class="op">&amp;</span> <span class="va">mo</span> <span class="op"><a href="like.html">%like%</a></span> <span class="st">"Enterococcus"</span><span class="op">)</span> <span class="op"><a href="https://magrittr.tidyverse.org/reference/pipe.html" class="external-link">%&gt;%</a></span>
<span class="fu"><a href="https://dplyr.tidyverse.org/reference/pull.html" class="external-link">pull</a></span><span class="op">(</span><span class="va">mo</span><span class="op">)</span>
<span class="co">#&gt; [1] "Enterococcus casseliflavus" "Enterococcus gallinarum"</span>
<span class="op">}</span>
<span class="co"># }</span>