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(v1.2.0.9026) move to github

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dr. M.S. (Matthijs) Berends
2020-07-08 14:48:06 +02:00
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commit 76fc8e1b14
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data-raw/microorganisms.txt
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@ -736,6 +736,7 @@
"B_ACNTB_JUNI" "Acinetobacter junii" "Bacteria" "Proteobacteria" "Gammaproteobacteria" "Pseudomonadales" "Moraxellaceae" "Acinetobacter" "junii" "" "species" "Bouvet et al., 1986" "29130b9324716febfdbce7179b01e9bd" "CoL" 1 "13879009"
"B_ACNTB_KOOK" "Acinetobacter kookii" "Bacteria" "Proteobacteria" "Gammaproteobacteria" "Pseudomonadales" "Moraxellaceae" "Acinetobacter" "kookii" "" "species" "Choi et al., 2013" "791314" "DSMZ" 1
"B_ACNTB_LCTC" "Acinetobacter lactucae" "Bacteria" "Proteobacteria" "Gammaproteobacteria" "Pseudomonadales" "Moraxellaceae" "Acinetobacter" "lactucae" "" "species" "Rooney et al., 2016" "794598" "DSMZ" 1
"B_ACNTB_LARV" "Acinetobacter larvae" "Bacteria" "Proteobacteria" "Gammaproteobacteria" "Pseudomonadales" "Moraxellaceae" "Acinetobacter" "larvae" "" "species" "Liu et al., 2017" "795207" "DSMZ" 1
"B_ACNTB_LWFF" "Acinetobacter lwoffii" "Bacteria" "Proteobacteria" "Gammaproteobacteria" "Pseudomonadales" "Moraxellaceae" "Acinetobacter" "lwoffii" "" "species" "Brisou et al., 1986" "6e3b1ed9854282e9bafce3b2f7df00f9" "CoL" 1
"B_ACNTB_MDST" "Acinetobacter modestus" "Bacteria" "Proteobacteria" "Gammaproteobacteria" "Pseudomonadales" "Moraxellaceae" "Acinetobacter" "modestus" "" "species" "Nemec et al., 2016" "794039" "DSMZ" 1
"B_ACNTB_NCTR" "Acinetobacter nectaris" "Bacteria" "Proteobacteria" "Gammaproteobacteria" "Pseudomonadales" "Moraxellaceae" "Acinetobacter" "nectaris" "" "species" "Alvarez-Perez et al., 2013" "790645" "DSMZ" 1 "723323008"
@ -2430,6 +2431,7 @@
"B_[FAM]_AEROCCCC" "Aerococcaceae" "Bacteria" "Firmicutes" "Bacilli" "Lactobacillales" "Aerococcaceae" "" "" "" "family" "" "057fddc497f1546f26951ef092e02b87" "CoL" 2
"B_AERCC" "Aerococcus" "Bacteria" "Firmicutes" "Bacilli" "Lactobacillales" "Aerococcaceae" "Aerococcus" "" "" "genus" "" "0fc66055ad0db611f60c4f0396421d51" "CoL" 2 "9008009"
"B_AERCC_CHRS" "Aerococcus christensenii" "Bacteria" "Firmicutes" "Bacilli" "Lactobacillales" "Aerococcaceae" "Aerococcus" "christensenii" "" "species" "Collins et al., 1999" "2ab13ae827b3c1ddd29fe7b60049a9ac" "CoL" 2 "409818008"
"B_AERCC_SNGC" "Aerococcus sanguicola" "Bacteria" "Firmicutes" "Bacilli" "Lactobacillales" "Aerococcaceae" "Aerococcus" "sanguicola" "" "species" "Lawson et al., 2001" "783326" "DSMZ" 2
"B_AERCC_SNGN" "Aerococcus sanguinicola" "Bacteria" "Firmicutes" "Bacilli" "Lactobacillales" "Aerococcaceae" "Aerococcus" "sanguinicola" "" "species" "Lawson et al., 2001" "796ff281ab493638185da69319259393" "CoL" 2 "427222006"
"B_AERCC_SUIS" "Aerococcus suis" "Bacteria" "Firmicutes" "Bacilli" "Lactobacillales" "Aerococcaceae" "Aerococcus" "suis" "" "species" "Vela et al., 2007" "17a074a54acf7f23420e046afd54c05f" "CoL" 2
"B_AERCC_URIN" "Aerococcus urinae" "Bacteria" "Firmicutes" "Bacilli" "Lactobacillales" "Aerococcaceae" "Aerococcus" "urinae" "" "species" "Aguirre et al., 1992" "7e2ead8d8cb690684800b35f8e80dfcd" "CoL" 2 "243230001"
@ -8417,6 +8419,9 @@
"B_BCTRD_GRMN" "Bacteroides graminisolvens" "Bacteria" "Bacteroidetes" "Bacteroidia" "Bacteroidales" "Bacteroidaceae" "Bacteroides" "graminisolvens" "" "species" "Nishiyama et al., 2009" "0189b31b513fe80ea7ca818c9ff43192" "CoL" 2
"B_BCTRD_HLCG" "Bacteroides helcogenes" "Bacteria" "Bacteroidetes" "Bacteroidia" "Bacteroidales" "Bacteroidaceae" "Bacteroides" "helcogenes" "" "species" "Benno et al., 1983" "761d72b47ca1a82a5996af2572135739" "CoL" 2
"B_BCTRD_INTS" "Bacteroides intestinalis" "Bacteria" "Bacteroidetes" "Bacteroidia" "Bacteroidales" "Bacteroidaceae" "Bacteroides" "intestinalis" "" "species" "Bakir et al., 2006" "0bfac827879b8d5e224f7758a3d2d8f1" "CoL" 2 "712915005"
"B_BCTRD_KRNS" "Bacteroides koreensis" "Bacteria" "Bacteroidetes" "Bacteroidia" "Bacteroidales" "Bacteroidaceae" "Bacteroides" "koreensis" "" "species" "Shin et al., 2017" "796142" "DSMZ" 2
"B_BCTRD_KRBB" "Bacteroides kribbi" "Bacteria" "Bacteroidetes" "Bacteroidia" "Bacteroidales" "Bacteroidaceae" "Bacteroides" "kribbi" "" "species" "Shin et al., 2017" "796143" "DSMZ" 2
"B_BCTRD_LNTS" "Bacteroides lentus" "Bacteria" "Bacteroidetes" "Bacteroidia" "Bacteroidales" "Bacteroidaceae" "Bacteroides" "lentus" "" "species" "Eggerth, 1935" "798327" "DSMZ" 2
"B_BCTRD_LUTI" "Bacteroides luti" "Bacteria" "Bacteroidetes" "Bacteroidia" "Bacteroidales" "Bacteroidaceae" "Bacteroides" "luti" "" "species" "Hatamoto et al., 2014" "791844" "DSMZ" 2
"B_BCTRD_MSSL" "Bacteroides massiliensis" "Bacteria" "Bacteroidetes" "Bacteroidia" "Bacteroidales" "Bacteroidaceae" "Bacteroides" "massiliensis" "" "species" "Fenner et al., 2005" "d214505a60093319e1a8e3ba61fe630f" "CoL" 2 "708567004"
"B_BCTRD_NORD" "Bacteroides nordii" "Bacteria" "Bacteroidetes" "Bacteroidia" "Bacteroidales" "Bacteroidaceae" "Bacteroides" "nordii" "" "species" "Song et al., 2005" "7d1b475a13de2624a212b7cf1eb7e132" "CoL" 2
@ -8435,6 +8440,7 @@
"B_BCTRD_SRTR" "Bacteroides sartorii" "Bacteria" "Bacteroidetes" "Bacteroidia" "Bacteroidales" "Bacteroidaceae" "Bacteroides" "sartorii" "" "species" "Clavel et al., 2012" "4f637ad6f3332fec71d795edf297f0c7" "CoL" 2
"B_BCTRD_STRC" "Bacteroides stercorirosoris" "Bacteria" "Bacteroidetes" "Bacteroidia" "Bacteroidales" "Bacteroidaceae" "Bacteroides" "stercorirosoris" "" "species" "Kitahara et al., 2012" "ee122c4c95090744a6bdf633fd9d5e00" "CoL" 2
"B_BCTRD_RCRS" "Bacteroides stercoris" "Bacteria" "Bacteroidetes" "Bacteroidia" "Bacteroidales" "Bacteroidaceae" "Bacteroides" "stercoris" "" "species" "Johnson et al., 1986" "daeebd5ec8bba7b76d45e1460db471c1" "CoL" 2 "163009"
"B_BCTRD_TCTM" "Bacteroides tectum" "Bacteria" "Bacteroidetes" "Bacteroidia" "Bacteroidales" "Bacteroidaceae" "Bacteroides" "tectum" "" "species" "Love et al., 1986" "783467" "DSMZ" 2
"B_BCTRD_THTT" "Bacteroides thetaiotaomicron" "Bacteria" "Bacteroidetes" "Bacteroidia" "Bacteroidales" "Bacteroidaceae" "Bacteroides" "thetaiotaomicron" "" "species" "Castellani et al., 1919" "c4bd13e2054f15c834480d57a8577020" "CoL" 2 "34236001"
"B_BCTRD_UNFR" "Bacteroides uniformis" "Bacteria" "Bacteroidetes" "Bacteroidia" "Bacteroidales" "Bacteroidaceae" "Bacteroides" "uniformis" "" "species" "Eggerth et al., 1933" "032345ae9e1b73dadb9b137d024b20bf" "CoL" 2 "59604009"
"B_BCTRD_VLGT" "Bacteroides vulgatus" "Bacteria" "Bacteroidetes" "Bacteroidia" "Bacteroidales" "Bacteroidaceae" "Bacteroides" "vulgatus" "" "species" "Eggerth et al., 1933" "f973c61c6d0a4e15928dbdc436b13c0f" "CoL" 2 "52798008"
@ -10965,6 +10971,7 @@
"B_CMPYL_COLI" "Campylobacter coli" "Bacteria" "Proteobacteria" "Epsilonproteobacteria" "Campylobacterales" "Campylobacteraceae" "Campylobacter" "coli" "" "species" "Veron et al., 1973" "6c569c28a8b120282d777d2b1f98554e" "CoL" 2 "40614002"
"B_CMPYL_CNCS" "Campylobacter concisus" "Bacteria" "Proteobacteria" "Epsilonproteobacteria" "Campylobacterales" "Campylobacteraceae" "Campylobacter" "concisus" "" "species" "Tanner et al., 1981" "6a7472de918950d9ea3fb4da6accbade" "CoL" 2 "9892000"
"B_CMPYL_CRCG" "Campylobacter corcagiensis" "Bacteria" "Proteobacteria" "Epsilonproteobacteria" "Campylobacterales" "Campylobacteraceae" "Campylobacter" "corcagiensis" "" "species" "Koziel et al., 2014" "792068" "DSMZ" 2
"B_CMPYL_CRYR" "Campylobacter cryaerophila" "Bacteria" "Proteobacteria" "Epsilonproteobacteria" "Campylobacterales" "Campylobacteraceae" "Campylobacter" "cryaerophila" "" "species" "Neill et al., 1985" "783584" "DSMZ" 2
"B_CMPYL_CNCL" "Campylobacter cuniculorum" "Bacteria" "Proteobacteria" "Epsilonproteobacteria" "Campylobacterales" "Campylobacteraceae" "Campylobacter" "cuniculorum" "" "species" "Zanoni et al., 2009" "3231356e94ded6c8ed9225a8174c2247" "CoL" 2
"B_CMPYL_CRVS" "Campylobacter curvus" "Bacteria" "Proteobacteria" "Epsilonproteobacteria" "Campylobacterales" "Campylobacteraceae" "Campylobacter" "curvus" "" "species" "Vandamme et al., 1991" "877e011524cf683cc924bc2afa2f4f1e" "CoL" 2 "116037008"
"B_CMPYL_FETS" "Campylobacter fetus" "Bacteria" "Proteobacteria" "Epsilonproteobacteria" "Campylobacterales" "Campylobacteraceae" "Campylobacter" "fetus" "" "species" "Sebald et al., 1963" "409ceefcdb679efc37676cadffb3e3e7" "CoL" 2 "84210007"
@ -15554,6 +15561,7 @@
"B_CRYNB_AMMN" "Corynebacterium ammoniagenes" "Bacteria" "Actinobacteria" "(unknown class)" "Actinomycetales" "Corynebacteriaceae" "Corynebacterium" "ammoniagenes" "" "species" "Collins, 1987" "83d6f101baca47719776d6daa091dd17" "CoL" 2 "113607008"
"B_CRYNB_AMYC" "Corynebacterium amycolatum" "Bacteria" "Actinobacteria" "(unknown class)" "Actinomycetales" "Corynebacteriaceae" "Corynebacterium" "amycolatum" "" "species" "Collins et al., 1988" "2697fc1a982784c82efbbe6d48d1ed64" "CoL" 2 "113611002"
"B_CRYNB_APPN" "Corynebacterium appendicis" "Bacteria" "Actinobacteria" "(unknown class)" "Actinomycetales" "Corynebacteriaceae" "Corynebacterium" "appendicis" "" "species" "Yassin et al., 2002" "a6749ae107d7955240ae4bacca4a3b53" "CoL" 2 "423659000"
"B_CRYNB_AQTC" "Corynebacterium aquaticum" "Bacteria" "Actinobacteria" "" "Actinomycetales" "Corynebacteriaceae" "Corynebacterium" "aquaticum" "" "species" "Leifson, 1962" "775153" "DSMZ" 2
"B_CRYNB_AQTM" "Corynebacterium aquatimens" "Bacteria" "Actinobacteria" "Actinobacteria" "Actinomycetales" "Corynebacteriaceae" "Corynebacterium" "aquatimens" "" "species" "Aravena-Roman et al., 2012" "790174" "DSMZ" 2
"B_CRYNB_AQUL" "Corynebacterium aquilae" "Bacteria" "Actinobacteria" "(unknown class)" "Actinomycetales" "Corynebacteriaceae" "Corynebacterium" "aquilae" "" "species" "Fernandez-Garayzabal et al., 2003" "eb89e2b18e8cf702deae686db631959a" "CoL" 2 "424012003"
"B_CRYNB_ARGN" "Corynebacterium argentoratense" "Bacteria" "Actinobacteria" "(unknown class)" "Actinomycetales" "Corynebacteriaceae" "Corynebacterium" "argentoratense" "" "species" "Riegel et al., 1995" "248437e186f079f9098b51d7eab9a104" "CoL" 2 "417499006"
@ -15583,6 +15591,7 @@
"B_CRYNB_DURM" "Corynebacterium durum" "Bacteria" "Actinobacteria" "(unknown class)" "Actinomycetales" "Corynebacteriaceae" "Corynebacterium" "durum" "" "species" "Riegel et al., 1997" "188914f51441fcf66e9dbdd6fa419ca5" "CoL" 2 "413926004"
"B_CRYNB_EFFC" "Corynebacterium efficiens" "Bacteria" "Actinobacteria" "(unknown class)" "Actinomycetales" "Corynebacteriaceae" "Corynebacterium" "efficiens" "" "species" "Fudou et al., 2002" "100e54272c41242bd210c760dc3d49da" "CoL" 2 "423379003"
"B_CRYNB_EPDR" "Corynebacterium epidermidicanis" "Bacteria" "Actinobacteria" "Actinobacteria" "Actinomycetales" "Corynebacteriaceae" "Corynebacterium" "epidermidicanis" "" "species" "Frischmann et al., 2018" "790130" "DSMZ" 2
"B_CRYNB_FACL" "Corynebacterium faecale" "Bacteria" "Actinobacteria" "" "Actinomycetales" "Corynebacteriaceae" "Corynebacterium" "faecale" "" "species" "Chen et al., 2016" "794251" "DSMZ" 2
"B_CRYNB_FLSN" "Corynebacterium falsenii" "Bacteria" "Actinobacteria" "(unknown class)" "Actinomycetales" "Corynebacteriaceae" "Corynebacterium" "falsenii" "" "species" "Sjoden et al., 1998" "a4b0881333077324ba938902ef33b158" "CoL" 2 "116389005"
"B_CRYNB_FLNM" "Corynebacterium felinum" "Bacteria" "Actinobacteria" "(unknown class)" "Actinomycetales" "Corynebacteriaceae" "Corynebacterium" "felinum" "" "species" "Collins et al., 2001" "633a1e897b7623235da9235464dcd67c" "CoL" 2 "423568009"
"B_CRYNB_FLVS" "Corynebacterium flavescens" "Bacteria" "Actinobacteria" "(unknown class)" "Actinomycetales" "Corynebacteriaceae" "Corynebacterium" "flavescens" "" "species" "Barksdale et al., 1979" "2aa053a0af38954875cb97011cb29443" "CoL" 2 "47802009"
@ -15609,6 +15618,7 @@
"B_CRYNB_KTSC" "Corynebacterium kutscheri" "Bacteria" "Actinobacteria" "(unknown class)" "Actinomycetales" "Corynebacteriaceae" "Corynebacterium" "kutscheri" "" "species" "Bergey et al., 1925" "8ea3128da9bfa7cfc5ab4fb8c83e35fc" "CoL" 2 "88575000"
"B_CRYNB_LCTS" "Corynebacterium lactis" "Bacteria" "Actinobacteria" "Actinobacteria" "Actinomycetales" "Corynebacteriaceae" "Corynebacterium" "lactis" "" "species" "Wiertz et al., 2018" "791337" "DSMZ" 2
"B_CRYNB_LPPH" "Corynebacterium lipophiloflavum" "Bacteria" "Actinobacteria" "(unknown class)" "Actinomycetales" "Corynebacteriaceae" "Corynebacterium" "lipophiloflavum" "" "species" "Funke et al., 1997" "da6181226ddbe16d620eb7fbd0d50b3f" "CoL" 2 "416863001"
"B_CRYNB_LQFC" "Corynebacterium liquefaciens" "Bacteria" "Actinobacteria" "" "Actinomycetales" "Corynebacteriaceae" "Corynebacterium" "liquefaciens" "" "species" "Laneelle et al., 1980" "798138" "DSMZ" 2
"B_CRYNB_LOWI" "Corynebacterium lowii" "Bacteria" "Actinobacteria" "Actinobacteria" "Actinomycetales" "Corynebacteriaceae" "Corynebacterium" "lowii" "" "species" "Bernard et al., 2016" "794320" "DSMZ" 2
"B_CRYNB_LBRC" "Corynebacterium lubricantis" "Bacteria" "Actinobacteria" "(unknown class)" "Actinomycetales" "Corynebacteriaceae" "Corynebacterium" "lubricantis" "" "species" "Kampfer et al., 2009" "b1b838e48e5f986bdebfce12e92b819b" "CoL" 2
"B_CRYNB_MCGN" "Corynebacterium macginleyi" "Bacteria" "Actinobacteria" "(unknown class)" "Actinomycetales" "Corynebacteriaceae" "Corynebacterium" "macginleyi" "" "species" "Riegel et al., 1995" "f061871344574f355ac6ac89f02a0aaf" "CoL" 2 "363772007"
@ -15661,7 +15671,9 @@
"B_CRYNB_URPY" "Corynebacterium uropygiale" "Bacteria" "Actinobacteria" "Actinobacteria" "Actinomycetales" "Corynebacteriaceae" "Corynebacterium" "uropygiale" "" "species" "Braun et al., 2016" "794126" "DSMZ" 2
"B_CRYNB_UTRQ" "Corynebacterium uterequi" "Bacteria" "Actinobacteria" "Actinobacteria" "Actinomycetales" "Corynebacteriaceae" "Corynebacterium" "uterequi" "" "species" "Hoyles et al., 2018" "791215" "DSMZ" 2
"B_CRYNB_VRBL" "Corynebacterium variabile" "Bacteria" "Actinobacteria" "(unknown class)" "Actinomycetales" "Corynebacteriaceae" "Corynebacterium" "variabile" "" "species" "Collins, 1987" "9c6d95c70bfb58c350f5295d423094bc" "CoL" 2 "11575001"
"B_CRYNB_RBLS" "Corynebacterium variabilis" "Bacteria" "Actinobacteria" "" "Actinomycetales" "Corynebacteriaceae" "Corynebacterium" "variabilis" "" "species" "Collins, 1987" "783701" "DSMZ" 2
"B_CRYNB_VTRM" "Corynebacterium vitaeruminis" "Bacteria" "Actinobacteria" "(unknown class)" "Actinomycetales" "Corynebacteriaceae" "Corynebacterium" "vitaeruminis" "" "species" "Laneelle et al., 1980" "81f6de6271113a7a1d61a141786c78fe" "CoL" 2 "116390001"
"B_CRYNB_TRMN" "Corynebacterium vitarumen" "Bacteria" "Actinobacteria" "" "Actinomycetales" "Corynebacteriaceae" "Corynebacterium" "vitarumen" "" "species" "Laneelle et al., 1980" "783702" "DSMZ" 2
"B_CRYNB_XRSS" "Corynebacterium xerosis" "Bacteria" "Actinobacteria" "(unknown class)" "Actinomycetales" "Corynebacteriaceae" "Corynebacterium" "xerosis" "" "species" "Lehmann et al., 1899" "eda368b36b3b5f8557b8fc25bb3d87f6" "CoL" 2 "27101006"
"C_CRYNP" "Corynophrya" "Chromista" "Ciliophora" "Kinetofragminophora" "Suctorida" "Corynophryidae" "Corynophrya" "" "" "genus" "" "30fbc7bc50db56001cfd44dcf07a5fc7" "CoL" 3
"C_CRYNP_ABYS" "Corynophrya abyssalis" "Chromista" "Ciliophora" "Kinetofragminophora" "Suctorida" "Corynophryidae" "Corynophrya" "abyssalis" "" "species" "Bartsch et al., 2010" "a18401393d14ee783e73e8be3c73a884" "CoL" 3
@ -17842,6 +17854,7 @@
"C_DNTST_ENPL" "Dentostomina enoplostoma" "Chromista" "Foraminifera" "Tubothalamea" "Miliolida" "Hauerinidae" "Dentostomina" "enoplostoma" "" "species" "DOrbigny, 1839" "0c50c5a83074677bc408c07de08fb8aa" "CoL" 3
"B_DRMBC" "Dermabacter" "Bacteria" "Actinobacteria" "(unknown class)" "Actinomycetales" "Dermabacteraceae" "Dermabacter" "" "" "genus" "" "c254973d79329a9a81babca22bf7aa51" "CoL" 2 "413976002"
"B_DRMBC_HMNS" "Dermabacter hominis" "Bacteria" "Actinobacteria" "(unknown class)" "Actinomycetales" "Dermabacteraceae" "Dermabacter" "hominis" "" "species" "Jones et al., 1989" "4d3ef12bee5e2d1e0093af5e6a738b0f" "CoL" 2 "413977006"
"B_DRMBC_JNJN" "Dermabacter jinjuensis" "Bacteria" "Actinobacteria" "" "Actinomycetales" "Dermabacteraceae" "Dermabacter" "jinjuensis" "" "species" "Park et al., 2016" "794255" "DSMZ" 2
"B_DRMBC_VGNL" "Dermabacter vaginalis" "Bacteria" "Actinobacteria" "Actinobacteria" "Actinomycetales" "Dermabacteraceae" "Dermabacter" "vaginalis" "" "species" "Chang et al., 2016" "794030" "DSMZ" 2
"B_[FAM]_DRMBCTRC" "Dermabacteraceae" "Bacteria" "Actinobacteria" "(unknown class)" "Actinomycetales" "Dermabacteraceae" "" "" "" "family" "" "0f21d57e4b28d96773e1081bad008181" "CoL" 2
"B_[FAM]_DERMCCCC" "Dermacoccaceae" "Bacteria" "Actinobacteria" "(unknown class)" "Actinomycetales" "Dermacoccaceae" "" "" "" "family" "" "d822dbf47675fbd561fcabd9388b58b4" "CoL" 2
@ -23874,6 +23887,8 @@
"C_FCHRA_ULRN" "Fuscheria ulurensis" "Chromista" "Ciliophora" "Gymnostomatea" "Haptorida" "Fuscheriidae" "Fuscheria" "ulurensis" "" "species" "Foissner et al., 2009" "eab418d60de109c70adebdcfadd38393" "CoL" 3
"C_[FAM]_FUSCHERD" "Fuscheriidae" "Chromista" "Ciliophora" "Gymnostomatea" "Haptorida" "Fuscheriidae" "" "" "" "family" "" "c142b58b7df6153f2b251f1fe35e1fcb" "CoL" 2
"B_FSBCT" "Fusibacter" "Bacteria" "Firmicutes" "Clostridia" "Clostridiales" "(unknown family)" "Fusibacter" "" "" "genus" "" "2ef1cc64021e41234ccb81337243e326" "CoL" 2
"B_FSBCT_BZRT" "Fusibacter bizertensis" "Bacteria" "Firmicutes" "Clostridia" "Clostridiales" "" "Fusibacter" "bizertensis" "" "species" "Smii et al., 2015" "792439" "DSMZ" 2
"B_FSBCT_FNTS" "Fusibacter fontis" "Bacteria" "Firmicutes" "Clostridia" "Clostridiales" "" "Fusibacter" "fontis" "" "species" "Fadhlaoui et al., 2015" "793321" "DSMZ" 2
"B_FSBCT_PCVR" "Fusibacter paucivorans" "Bacteria" "Firmicutes" "Clostridia" "Clostridiales" "(unknown family)" "Fusibacter" "paucivorans" "" "species" "Ravot et al., 1999" "e377365519fc9048e61ebe12b0acc6da" "CoL" 2
"B_FSBCT_TNSN" "Fusibacter tunisiensis" "Bacteria" "Firmicutes" "Clostridia" "Clostridiales" "(unknown family)" "Fusibacter" "tunisiensis" "" "species" "Ben Hania et al., 2012" "fc23fa7985bcce14cb779cfdd5e8c24a" "CoL" 2
"B_FSCTN" "Fusicatenibacter" "Bacteria" "Firmicutes" "Clostridia" "Clostridiales" "Lachnospiraceae" "Fusicatenibacter" "" "" "genus" "" "DSMZ" 2
@ -24127,7 +24142,9 @@
"B_GEMLL_HMLY" "Gemella haemolysans" "Bacteria" "Firmicutes" "Bacilli" "Bacillales" "(unknown family)" "Gemella" "haemolysans" "" "species" "Berger, 1960" "cb12ee9348456944da1452c2ee07f711" "CoL" 2 "37511002"
"B_GEMLL_MRBL" "Gemella morbillorum" "Bacteria" "Firmicutes" "Bacilli" "Bacillales" "(unknown family)" "Gemella" "morbillorum" "" "species" "Kilpper-Balz et al., 1988" "2cf1ae502c0bf7d053d9520f7bc12d1e" "CoL" 2 "113765006"
"B_GEMLL_PLTC" "Gemella palaticanis" "Bacteria" "Firmicutes" "Bacilli" "Bacillales" "(unknown family)" "Gemella" "palaticanis" "" "species" "Collins et al., 1999" "0413b4f5665e096d10b0dd2c59f07646" "CoL" 2
"B_GEMLL_PRHM" "Gemella parahaemolysans" "Bacteria" "Firmicutes" "Bacilli" "Bacillales" "" "Gemella" "parahaemolysans" "" "species" "Hung et al., 2014" "791874" "DSMZ" 2
"B_GEMLL_SNGN" "Gemella sanguinis" "Bacteria" "Firmicutes" "Bacilli" "Bacillales" "(unknown family)" "Gemella" "sanguinis" "" "species" "Collins et al., 1999" "2c5a8f12014c650dfe5f55accde88084" "CoL" 2 "125038007"
"B_GEMLL_TWNN" "Gemella taiwanensis" "Bacteria" "Firmicutes" "Bacilli" "Bacillales" "" "Gemella" "taiwanensis" "" "species" "Hung et al., 2014" "791875" "DSMZ" 2
"B_GMNCC" "Geminicoccus" "Bacteria" "Proteobacteria" "Alphaproteobacteria" "(unknown order)" "(unknown family)" "Geminicoccus" "" "" "genus" "" "3791b89a357dd7b75651125e72e5a27e" "CoL" 2
"B_GMNCC_ROSS" "Geminicoccus roseus" "Bacteria" "Proteobacteria" "Alphaproteobacteria" "(unknown order)" "(unknown family)" "Geminicoccus" "roseus" "" "species" "Foesel et al., 2008" "ab4e9af2a2755d93be9d56dd1536c1e6" "CoL" 2
"C_GMNLL" "Geminiella" "Chromista" "Foraminifera" "(unknown class)" "Lagenida" "Ellipsolagenidae" "Geminiella" "" "" "genus" "" "163b7468129f33c2476fc3f18bfd8c88" "CoL" 3
@ -30007,10 +30024,13 @@
"B_LCTBC_RDNT" "Lactobacillus rodentium" "Bacteria" "Firmicutes" "Bacilli" "Lactobacillales" "Lactobacillaceae" "Lactobacillus" "rodentium" "" "species" "Killer et al., 2014" "791838" "DSMZ" 2
"B_LCTBC_ROGS" "Lactobacillus rogosae" "Bacteria" "Firmicutes" "Bacilli" "Lactobacillales" "Lactobacillaceae" "Lactobacillus" "rogosae" "" "species" "Holdeman et al., 1974" "1c971bb2a729c6604e6e5686fd92559f" "CoL" 2
"B_LCTBC_ROSS" "Lactobacillus rossiae" "Bacteria" "Firmicutes" "Bacilli" "Lactobacillales" "Lactobacillaceae" "Lactobacillus" "rossiae" "" "species" "Corsetti et al., 2005" "bb0621ab2aabb15f4880b9a92c698b2a" "CoL" 2 "432194007"
"B_LCTBC_RSSI" "Lactobacillus rossii" "Bacteria" "Firmicutes" "Bacilli" "Lactobacillales" "Lactobacillaceae" "Lactobacillus" "rossii" "" "species" "Corsetti et al., 2005" "784068" "DSMZ" 2
"B_LCTBC_RMNS" "Lactobacillus ruminis" "Bacteria" "Firmicutes" "Bacilli" "Lactobacillales" "Lactobacillaceae" "Lactobacillus" "ruminis" "" "species" "Sharpe et al., 1973" "227f53c5db4073601a8da25c2aa823a0" "CoL" 2 "84370002"
"B_LCTBC_SRMN" "Lactobacillus saerimneri" "Bacteria" "Firmicutes" "Bacilli" "Lactobacillales" "Lactobacillaceae" "Lactobacillus" "saerimneri" "" "species" "Pedersen et al., 2004" "48fdd7d3958b20a80de0f6aa37215fe2" "CoL" 2 "432191004"
"B_LCTBC_SAKE_SAKE" "Lactobacillus sake sake" "Bacteria" "Firmicutes" "Bacilli" "Lactobacillales" "Lactobacillaceae" "Lactobacillus" "sake" "sake" "species" "Torriani et al., 1996" "784071" "DSMZ" 2
"B_LCTBC_SAKE" "Lactobacillus sakei" "Bacteria" "Firmicutes" "Bacilli" "Lactobacillales" "Lactobacillaceae" "Lactobacillus" "sakei" "" "species" "Katagiri et al., 1996" "539147a998aca4d1b21139df1c19da17" "CoL" 2 "39861009"
"B_LCTBC_SAKE_CRNS" "Lactobacillus sakei carnosus" "Bacteria" "Firmicutes" "Bacilli" "Lactobacillales" "Lactobacillaceae" "Lactobacillus" "sakei" "carnosus" "infraspecies" "Torriani et al., 1996" "dde7319e76c9247eb5ad732536eb07c8" "CoL" 2
"B_LCTBC_SKEI_SAKE" "Lactobacillus sakei sake" "Bacteria" "Firmicutes" "Bacilli" "Lactobacillales" "Lactobacillaceae" "Lactobacillus" "sakei" "sake" "species" "Torriani et al., 1996" "798356" "DSMZ" 2
"B_LCTBC_SLTL" "Lactobacillus salitolerans" "Bacteria" "Firmicutes" "Bacilli" "Lactobacillales" "Lactobacillaceae" "Lactobacillus" "salitolerans" "" "species" "Tohno et al., 2019" "800710" "DSMZ" 2
"B_LCTBC_SLVR" "Lactobacillus salivarius" "Bacteria" "Firmicutes" "Bacilli" "Lactobacillales" "Lactobacillaceae" "Lactobacillus" "salivarius" "" "species" "Rogosa et al., 2006" "ac34ff01c9afe0de2ab69bfd339704b6" "CoL" 2 "37809002"
"B_LCTBC_SNFR" "Lactobacillus sanfranciscensis" "Bacteria" "Firmicutes" "Bacilli" "Lactobacillales" "Lactobacillaceae" "Lactobacillus" "sanfranciscensis" "" "species" "Weiss et al., 1984" "4211a00b19dfc4632b868fe123b0d1b8" "CoL" 2 "432195008"
@ -39308,6 +39328,7 @@
"B_NESSR_CANS" "Neisseria canis" "Bacteria" "Proteobacteria" "Betaproteobacteria" "Neisseriales" "Neisseriaceae" "Neisseria" "canis" "" "species" "Berger, 1962" "f588178a6f811167d2a08e5d7b2a7310" "CoL" 2 "54978009"
"B_NESSR_CINR" "Neisseria cinerea" "Bacteria" "Proteobacteria" "Betaproteobacteria" "Neisseriales" "Neisseriaceae" "Neisseria" "cinerea" "" "species" "Murray, 1939" "80fa1e21c2efa5f0c00ca26a5c190c1d" "CoL" 2 "69312007"
"B_NESSR_DENT" "Neisseria dentiae" "Bacteria" "Proteobacteria" "Betaproteobacteria" "Neisseriales" "Neisseriaceae" "Neisseria" "dentiae" "" "species" "Sneath et al., 1997" "e6428b38ccc3818fb21e2146b9b9da01" "CoL" 2
"B_NESSR_DMSN" "Neisseria dumasiana" "Bacteria" "Proteobacteria" "Betaproteobacteria" "Neisseriales" "Neisseriaceae" "Neisseria" "dumasiana" "" "species" "Wroblewski et al., 2017" "796193" "DSMZ" 2
"B_NESSR_ELNG" "Neisseria elongata" "Bacteria" "Proteobacteria" "Betaproteobacteria" "Neisseriales" "Neisseriaceae" "Neisseria" "elongata" "" "species" "Bovre et al., 1970" "4fd583a67fe0f765137e4902de5cf11e" "CoL" 2 "12638001"
"B_NESSR_ELNG_GLYC" "Neisseria elongata glycolytica" "Bacteria" "Proteobacteria" "Betaproteobacteria" "Neisseriales" "Neisseriaceae" "Neisseria" "elongata" "glycolytica" "infraspecies" "Henriksen et al., 1976" "53eb476c001de688a708c637afc447d1" "CoL" 2 "35693009"
"B_NESSR_ELNG_NTRR" "Neisseria elongata nitroreducens" "Bacteria" "Proteobacteria" "Betaproteobacteria" "Neisseriales" "Neisseriaceae" "Neisseria" "elongata" "nitroreducens" "infraspecies" "Grant et al., 1991" "017d680b532a5e4033a40ef0dd780905" "CoL" 2
@ -42653,10 +42674,12 @@
"B_[FAM]_PANBCLLC" "Paenibacillaceae" "Bacteria" "Firmicutes" "Bacilli" "Bacillales" "Paenibacillaceae" "" "" "" "family" "" "06f43a6ef8ac500d8120040e50675f88" "CoL" 2
"B_PNBCL" "Paenibacillus" "Bacteria" "Firmicutes" "Bacilli" "Bacillales" "Paenibacillaceae" "Paenibacillus" "" "" "genus" "" "d778edb5225cb28bd7344ed5dbd083e1" "CoL" 2 "114086007"
"B_PNBCL_ABYS" "Paenibacillus abyssi" "Bacteria" "Firmicutes" "Bacilli" "Bacillales" "Paenibacillaceae" "Paenibacillus" "abyssi" "" "species" "Huang et al., 2015" "792663" "DSMZ" 2
"B_PNBCL_ACRS" "Paenibacillus aceris" "Bacteria" "Firmicutes" "Bacilli" "Bacillales" "Paenibacillaceae" "Paenibacillus" "aceris" "" "species" "Hwang et al., 2017" "795204" "DSMZ" 2
"B_PNBCL_ACET" "Paenibacillus aceti" "Bacteria" "Firmicutes" "Bacilli" "Bacillales" "Paenibacillaceae" "Paenibacillus" "aceti" "" "species" "Li et al., 2016" "794569" "DSMZ" 2
"B_PNBCL_AEST" "Paenibacillus aestuarii" "Bacteria" "Firmicutes" "Bacilli" "Bacillales" "Paenibacillaceae" "Paenibacillus" "aestuarii" "" "species" "Bae et al., 2010" "2eaeee843908dc72f01599c01d1d7824" "CoL" 2
"B_PNBCL_AGRX" "Paenibacillus agarexedens" "Bacteria" "Firmicutes" "Bacilli" "Bacillales" "Paenibacillaceae" "Paenibacillus" "agarexedens" "" "species" "Uetanabaro et al., 2003" "34f7325ea04df422addf6139f76227a4" "CoL" 2 "429906007"
"B_PNBCL_AGRD" "Paenibacillus agaridevorans" "Bacteria" "Firmicutes" "Bacilli" "Bacillales" "Paenibacillaceae" "Paenibacillus" "agaridevorans" "" "species" "Uetanabaro et al., 2003" "830aae21cbe86216066ba7af5f9c87cb" "CoL" 2 "429907003"
"B_PNBCL_ALBD" "Paenibacillus albidus" "Bacteria" "Firmicutes" "Bacilli" "Bacillales" "Paenibacillaceae" "Paenibacillus" "albidus" "" "species" "Zhuang et al., 2017" "796151" "DSMZ" 2
"B_PNBCL_ALGN" "Paenibacillus alginolyticus" "Bacteria" "Firmicutes" "Bacilli" "Bacillales" "Paenibacillaceae" "Paenibacillus" "alginolyticus" "" "species" "Shida et al., 1997" "bc3b26b031ae0349cad729c4a579522e" "CoL" 2 "114087003"
"B_PNBCL_ALGR" "Paenibacillus algorifonticola" "Bacteria" "Firmicutes" "Bacilli" "Bacillales" "Paenibacillaceae" "Paenibacillus" "algorifonticola" "" "species" "Tang et al., 2011" "29a27c78f5d93976913c98158bea624d" "CoL" 2
"B_PNBCL_ALKL" "Paenibacillus alkaliterrae" "Bacteria" "Firmicutes" "Bacilli" "Bacillales" "Paenibacillaceae" "Paenibacillus" "alkaliterrae" "" "species" "Yoon et al., 2005" "819caeb31dafeee45c8b67e01809e774" "CoL" 2
@ -42705,6 +42728,7 @@
"B_PNBCL_DNDR" "Paenibacillus dendritiformis" "Bacteria" "Firmicutes" "Bacilli" "Bacillales" "Paenibacillaceae" "Paenibacillus" "dendritiformis" "" "species" "Tcherpakov et al., 1999" "e98e22d6a5472c702d773f45208b8d3f" "CoL" 2 "430608007"
"B_PNBCL_DNGD" "Paenibacillus dongdonensis" "Bacteria" "Firmicutes" "Bacilli" "Bacillales" "Paenibacillaceae" "Paenibacillus" "dongdonensis" "" "species" "Son et al., 2014" "792042" "DSMZ" 2
"B_PNBCL_DSNN" "Paenibacillus doosanensis" "Bacteria" "Firmicutes" "Bacilli" "Bacillales" "Paenibacillaceae" "Paenibacillus" "doosanensis" "" "species" "Kim et al., 2014" "791705" "DSMZ" 2
"B_PNBCL_DURM" "Paenibacillus durum" "Bacteria" "Firmicutes" "Bacilli" "Bacillales" "Paenibacillaceae" "Paenibacillus" "durum" "" "species" "Collins et al., 1994" "784553" "DSMZ" 2
"B_PNBCL_DURS" "Paenibacillus durus" "Bacteria" "Firmicutes" "Bacilli" "Bacillales" "Paenibacillaceae" "Paenibacillus" "durus" "" "species" "Collins et al., 1994" "3d10d59aee2784ef5fff65f7538ac245" "CoL" 2 "114091008"
"B_PNBCL_EDPH" "Paenibacillus edaphicus" "Bacteria" "Firmicutes" "Bacilli" "Bacillales" "Paenibacillaceae" "Paenibacillus" "edaphicus" "" "species" "Hu et al., 2010" "55c35c5efb25e66c778cf6d60eac2e9a" "CoL" 2
"B_PNBCL_EHMN" "Paenibacillus ehimensis" "Bacteria" "Firmicutes" "Bacilli" "Bacillales" "Paenibacillaceae" "Paenibacillus" "ehimensis" "" "species" "Lee et al., 2004" "977994e73d0595da2d2fdeaa365eb6cd" "CoL" 2 "430609004"
@ -42752,6 +42776,7 @@
"B_PNBCL_KRBB" "Paenibacillus kribbensis" "Bacteria" "Firmicutes" "Bacilli" "Bacillales" "Paenibacillaceae" "Paenibacillus" "kribbensis" "" "species" "Yoon et al., 2003" "7990cce5493b343b4dd578b73c8da83e" "CoL" 2
"B_PNBCL_KYNG" "Paenibacillus kyungheensis" "Bacteria" "Firmicutes" "Bacilli" "Bacillales" "Paenibacillaceae" "Paenibacillus" "kyungheensis" "" "species" "Siddiqi et al., 2015" "793494" "DSMZ" 2
"B_PNBCL_LCTS" "Paenibacillus lactis" "Bacteria" "Firmicutes" "Bacilli" "Bacillales" "Paenibacillaceae" "Paenibacillus" "lactis" "" "species" "Scheldeman et al., 2004" "a8fa50353b31da34a322d9fca3881572" "CoL" 2 "430629003"
"B_PNBCL_LACS" "Paenibacillus lacus" "Bacteria" "Firmicutes" "Bacilli" "Bacillales" "Paenibacillaceae" "Paenibacillus" "lacus" "" "species" "Chen et al., 2017" "795288" "DSMZ" 2
"B_PNBCL_LARV" "Paenibacillus larvae" "Bacteria" "Firmicutes" "Bacilli" "Bacillales" "Paenibacillaceae" "Paenibacillus" "larvae" "" "species" "Ash et al., 2006" "9bfc05efd3eea0854db404760e482e1e" "CoL" 2 "114098002"
"B_PNBCL_LATS" "Paenibacillus lautus" "Bacteria" "Firmicutes" "Bacilli" "Bacillales" "Paenibacillaceae" "Paenibacillus" "lautus" "" "species" "Heyndrickx et al., 1996" "b73ba9f5e23a3f1ddd34fcb98a3a10f8" "CoL" 2 "114100002"
"B_PNBCL_LEMN" "Paenibacillus lemnae" "Bacteria" "Firmicutes" "Bacilli" "Bacillales" "Paenibacillaceae" "Paenibacillus" "lemnae" "" "species" "Kittiwongwattana et al., 2015" "792440" "DSMZ" 2
@ -43113,6 +43138,7 @@
"B_PANTO" "Pantoea" "Bacteria" "Proteobacteria" "Gammaproteobacteria" "Enterobacterales" "Erwiniaceae" "Pantoea" "" "" "genus" "" "5e1e7e2c2f3da486dfc2d89e6b75865e" "CoL" 1 "115013001"
"B_PANTO_AGGL" "Pantoea agglomerans" "Bacteria" "Proteobacteria" "Gammaproteobacteria" "Enterobacterales" "Erwiniaceae" "Pantoea" "agglomerans" "" "species" "Gavini et al., 1989" "a0ec10fe69cbe44b829f9c387c6d5ebd" "CoL" 1 "115015008"
"B_PANTO_ALLI" "Pantoea allii" "Bacteria" "Proteobacteria" "Gammaproteobacteria" "Enterobacterales" "Erwiniaceae" "Pantoea" "allii" "" "species" "Brady et al., 2011" "4dd07886be48e1ae6e8ed37d203c0f84" "CoL" 1
"B_PANTO_ANNS" "Pantoea ananas" "Bacteria" "Proteobacteria" "Gammaproteobacteria" "Enterobacterales" "Erwiniaceae" "Pantoea" "ananas" "" "species" "Mergaert et al., 1993" "784563" "DSMZ" 1
"B_PANTO_ANNT" "Pantoea ananatis" "Bacteria" "Proteobacteria" "Gammaproteobacteria" "Enterobacterales" "Erwiniaceae" "Pantoea" "ananatis" "" "species" "Mergaert et al., 1993" "2c54740884f84a1a71a5cd300a79d15a" "CoL" 1 "115014007"
"B_PANTO_ANTH" "Pantoea anthophila" "Bacteria" "Proteobacteria" "Gammaproteobacteria" "Enterobacterales" "Erwiniaceae" "Pantoea" "anthophila" "" "species" "Brady et al., 2009" "e722c6d8bb737b44d817a317c8ef8013" "CoL" 1
"B_PANTO_BRNN" "Pantoea brenneri" "Bacteria" "Proteobacteria" "Gammaproteobacteria" "Enterobacterales" "Erwiniaceae" "Pantoea" "brenneri" "" "species" "Brady et al., 2010" "4431f9b8fd978b73e96e06a1286006c5" "CoL" 1
@ -49833,6 +49859,7 @@
"C_PRTNN_RNHL" "Proteonina reinholdi" "Chromista" "Foraminifera" "Globothalamea" "Lituolida" "Hormosinidae" "Proteonina" "reinholdi" "" "species" "Ten Dam, 1947" "c05060e270f23cfba9b6e353efdb2769" "CoL" 3
"B_PROTS" "Proteus" "Bacteria" "Proteobacteria" "Gammaproteobacteria" "Enterobacterales" "Morganellaceae" "Proteus" "" "" "genus" "" "0f62bf27dd2e0a29481695b9c7a55fa5" "CoL" 1 "50517009"
"B_PROTS_ALMN" "Proteus alimentorum" "Bacteria" "Proteobacteria" "Gammaproteobacteria" "Enterobacterales" "Morganellaceae" "Proteus" "alimentorum" "" "species" "Dai et al., 2018" "797660" "DSMZ" 1
"B_PROTS_CBRS" "Proteus cibarius" "Bacteria" "Proteobacteria" "Gammaproteobacteria" "Enterobacterales" "Morganellaceae" "Proteus" "cibarius" "" "species" "Hyun et al., 2016" "794180" "DSMZ" 1
"B_PROTS_CIBI" "Proteus cibi" "Bacteria" "Proteobacteria" "Gammaproteobacteria" "Enterobacterales" "Morganellaceae" "Proteus" "cibi" "" "species" "Dai et al., 2019" "800142" "DSMZ" 1
"B_PROTS_CLMB" "Proteus columbae" "Bacteria" "Proteobacteria" "Gammaproteobacteria" "Enterobacterales" "Morganellaceae" "Proteus" "columbae" "" "species" "Dai et al., 2018" "797522" "DSMZ" 1
"B_PROTS_FACS" "Proteus faecis" "Bacteria" "Proteobacteria" "Gammaproteobacteria" "Enterobacterales" "Morganellaceae" "Proteus" "faecis" "" "species" "Dai et al., 2019" "800143" "DSMZ" 1
@ -50641,6 +50668,7 @@
"B_PSDMN_BRSS_NRNT" "Pseudomonas brassicacearum neoaurantiaca" "Bacteria" "Proteobacteria" "Gammaproteobacteria" "Pseudomonadales" "Pseudomonadaceae" "Pseudomonas" "brassicacearum" "neoaurantiaca" "infraspecies" "Ivanova et al., 2009" "ec8927aacb91b3a6cc4ca4a685f3914b" "CoL" 1
"B_PSDMN_BRNN" "Pseudomonas brenneri" "Bacteria" "Proteobacteria" "Gammaproteobacteria" "Pseudomonadales" "Pseudomonadaceae" "Pseudomonas" "brenneri" "" "species" "Baida et al., 2002" "49c16df22b9794811ee11992e802fb75" "CoL" 1 "415188002"
"B_PSDMN_CAEN" "Pseudomonas caeni" "Bacteria" "Proteobacteria" "Gammaproteobacteria" "Pseudomonadales" "Pseudomonadaceae" "Pseudomonas" "caeni" "" "species" "Xiao et al., 2009" "aa17e9af46852075ef859e600004f3e7" "CoL" 1
"B_PSDMN_CNDN" "Pseudomonas canadensis" "Bacteria" "Proteobacteria" "Gammaproteobacteria" "Pseudomonadales" "Pseudomonadaceae" "Pseudomonas" "canadensis" "" "species" "Tambong et al., 2017" "795214" "DSMZ" 1
"B_PSDMN_CNNB" "Pseudomonas cannabina" "Bacteria" "Proteobacteria" "Gammaproteobacteria" "Pseudomonadales" "Pseudomonadaceae" "Pseudomonas" "cannabina" "" "species" "Gardan et al., 1999" "eca546200fc614d4abd73c834d001c3c" "CoL" 1
"B_PSDMN_CRBX" "Pseudomonas carboxydohydrogena" "Bacteria" "Proteobacteria" "Gammaproteobacteria" "Pseudomonadales" "Pseudomonadaceae" "Pseudomonas" "carboxydohydrogena" "" "species" "Meyer et al., 1980" "6b549eed20115e65b1a5a7551409e7a5" "CoL" 1
"B_PSDMN_CRCP" "Pseudomonas caricapapayae" "Bacteria" "Proteobacteria" "Gammaproteobacteria" "Pseudomonadales" "Pseudomonadaceae" "Pseudomonas" "caricapapayae" "" "species" "Robbs, 1956" "b2197848de1e1c7c10e903a27ab04aba" "CoL" 1 "76278000"
@ -50791,6 +50819,7 @@
"B_PSDMN_TNNS" "Pseudomonas taeanensis" "Bacteria" "Proteobacteria" "Gammaproteobacteria" "Pseudomonadales" "Pseudomonadaceae" "Pseudomonas" "taeanensis" "" "species" "Lee et al., 2010" "db0759c67acd25a657bdd93c8a41869e" "CoL" 1
"B_PSDMN_TTRL" "Pseudomonas taetrolens" "Bacteria" "Proteobacteria" "Gammaproteobacteria" "Pseudomonadales" "Pseudomonadaceae" "Pseudomonas" "taetrolens" "" "species" "Haynes, 1957" "37765eb7414456ba397f87b02ab3965c" "CoL" 1 "73287000"
"B_PSDMN_TWNN" "Pseudomonas taiwanensis" "Bacteria" "Proteobacteria" "Gammaproteobacteria" "Pseudomonadales" "Pseudomonadaceae" "Pseudomonas" "taiwanensis" "" "species" "Wang et al., 2010" "8d20832d1ffec1d093791edab57c79df" "CoL" 1 "450372006"
"B_PSDMN_TRMN" "Pseudomonas tarimensis" "Bacteria" "Proteobacteria" "Gammaproteobacteria" "Pseudomonadales" "Pseudomonadaceae" "Pseudomonas" "tarimensis" "" "species" "Anwar et al., 2017" "796144" "DSMZ" 1
"B_PSDMN_THRM" "Pseudomonas thermotolerans" "Bacteria" "Proteobacteria" "Gammaproteobacteria" "Pseudomonadales" "Pseudomonadaceae" "Pseudomonas" "thermotolerans" "" "species" "Manaia et al., 2002" "05b82ed17c4615effe847440ec86dfd1" "CoL" 1 "438068005"
"B_PSDMN_THVR" "Pseudomonas thivervalensis" "Bacteria" "Proteobacteria" "Gammaproteobacteria" "Pseudomonadales" "Pseudomonadaceae" "Pseudomonas" "thivervalensis" "" "species" "Achouak et al., 2000" "78fb8ff185618bc7c11c117c2f1551f3" "CoL" 1 "438028006"
"B_PSDMN_TNJN" "Pseudomonas tianjinensis" "Bacteria" "Proteobacteria" "Gammaproteobacteria" "Pseudomonadales" "Pseudomonadaceae" "Pseudomonas" "tianjinensis" "" "species" "Chen et al., 2018" "797819" "DSMZ" 1
@ -56894,12 +56923,14 @@
"B_SPHNGB_ALKL" "Sphingobacterium alkalisoli" "Bacteria" "Bacteroidetes" "Sphingobacteriia" "Sphingobacteriales" "Sphingobacteriaceae" "Sphingobacterium" "alkalisoli" "" "species" "Xu et al., 2017" "795403" "DSMZ" 3
"B_SPHNGB_ANHN" "Sphingobacterium anhuiense" "Bacteria" "Bacteroidetes" "Sphingobacteriia" "Sphingobacteriales" "Sphingobacteriaceae" "Sphingobacterium" "anhuiense" "" "species" "Wei et al., 2008" "7639c737c663d05e1aee5fd3fed2b3c8" "CoL" 3
"B_SPHNGB_ANTR" "Sphingobacterium antarcticum" "Bacteria" "Bacteroidetes" "Sphingobacteriia" "Sphingobacteriales" "Sphingobacteriaceae" "Sphingobacterium" "antarcticum" "" "species" "Shivaji et al., 1992" "e19db9fdbc0a7ab1bf11b50b7fa32deb" "CoL" 3
"B_SPHNGB_CTCS" "Sphingobacterium antarcticus" "Bacteria" "Bacteroidetes" "Sphingobacteriia" "Sphingobacteriales" "Sphingobacteriaceae" "Sphingobacterium" "antarcticus" "" "species" "Shivaji et al., 1992" "784914" "DSMZ" 3
"B_SPHNGB_AREN" "Sphingobacterium arenae" "Bacteria" "Bacteroidetes" "Sphingobacteriia" "Sphingobacteriales" "Sphingobacteriaceae" "Sphingobacterium" "arenae" "" "species" "Jiang et al., 2014" "791480" "DSMZ" 3
"B_SPHNGB_ATHY" "Sphingobacterium athyrii" "Bacteria" "Bacteroidetes" "Sphingobacteriia" "Sphingobacteriales" "Sphingobacteriaceae" "Sphingobacterium" "athyrii" "" "species" "Cheng et al., 2019" "800119" "DSMZ" 3
"B_SPHNGB_BMBS" "Sphingobacterium bambusae" "Bacteria" "Bacteroidetes" "Sphingobacteriia" "Sphingobacteriales" "Sphingobacteriaceae" "Sphingobacterium" "bambusae" "" "species" "Duan et al., 2010" "9d76b2529efee4d3b1965472384825b0" "CoL" 3
"B_SPHNGB_BVSG" "Sphingobacterium bovisgrunnientis" "Bacteria" "Bacteroidetes" "Sphingobacteriia" "Sphingobacteriales" "Sphingobacteriaceae" "Sphingobacterium" "bovisgrunnientis" "" "species" "Kaur et al., 2018" "797534" "DSMZ" 3
"B_SPHNGB_CAEN" "Sphingobacterium caeni" "Bacteria" "Bacteroidetes" "Sphingobacteriia" "Sphingobacteriales" "Sphingobacteriaceae" "Sphingobacterium" "caeni" "" "species" "Sun et al., 2013" "790835" "DSMZ" 3
"B_SPHNGB_CNDN" "Sphingobacterium canadense" "Bacteria" "Bacteroidetes" "Sphingobacteriia" "Sphingobacteriales" "Sphingobacteriaceae" "Sphingobacterium" "canadense" "" "species" "Mehnaz et al., 2008" "e0dd9101ff5b891528b9c312f348d715" "CoL" 3
"B_SPHNGB_CLLL" "Sphingobacterium cellulitidis" "Bacteria" "Bacteroidetes" "Sphingobacteriia" "Sphingobacteriales" "Sphingobacteriaceae" "Sphingobacterium" "cellulitidis" "" "species" "Huys et al., 2017" "795224" "DSMZ" 3
"B_SPHNGB_CHNG" "Sphingobacterium changzhouense" "Bacteria" "Bacteroidetes" "Sphingobacteriia" "Sphingobacteriales" "Sphingobacteriaceae" "Sphingobacterium" "changzhouense" "" "species" "Liu et al., 2013" "791381" "DSMZ" 3
"B_SPHNGB_CHZH" "Sphingobacterium chuzhouense" "Bacteria" "Bacteroidetes" "Sphingobacteriia" "Sphingobacteriales" "Sphingobacteriaceae" "Sphingobacterium" "chuzhouense" "" "species" "Wang et al., 2016" "794891" "DSMZ" 3
"B_SPHNGB_CIBI" "Sphingobacterium cibi" "Bacteria" "Bacteroidetes" "Sphingobacteriia" "Sphingobacteriales" "Sphingobacteriaceae" "Sphingobacterium" "cibi" "" "species" "Lai et al., 2016" "794899" "DSMZ" 3
@ -56914,6 +56945,7 @@
"B_SPHNGB_GRSF" "Sphingobacterium griseoflavum" "Bacteria" "Bacteroidetes" "Sphingobacteriia" "Sphingobacteriales" "Sphingobacteriaceae" "Sphingobacterium" "griseoflavum" "" "species" "Long et al., 2016" "794133" "DSMZ" 3
"B_SPHNGB_HLXY" "Sphingobacterium haloxyli" "Bacteria" "Bacteroidetes" "Sphingobacteriia" "Sphingobacteriales" "Sphingobacteriaceae" "Sphingobacterium" "haloxyli" "" "species" "Liu et al., 2018" "797903" "DSMZ" 3
"B_SPHNGB_HTNN" "Sphingobacterium hotanense" "Bacteria" "Bacteroidetes" "Sphingobacteriia" "Sphingobacteriales" "Sphingobacteriaceae" "Sphingobacterium" "hotanense" "" "species" "Xiao et al., 2013" "790574" "DSMZ" 3
"B_SPHNGB_HUMI" "Sphingobacterium humi" "Bacteria" "Bacteroidetes" "Sphingobacteriia" "Sphingobacteriales" "Sphingobacteriaceae" "Sphingobacterium" "humi" "" "species" "Lee et al., 2017" "796154" "DSMZ" 3
"B_SPHNGB_JJNS" "Sphingobacterium jejuense" "Bacteria" "Bacteroidetes" "Sphingobacteriia" "Sphingobacteriales" "Sphingobacteriaceae" "Sphingobacterium" "jejuense" "" "species" "Siddiqi et al., 2016" "794795" "DSMZ" 3
"B_SPHNGB_KTHR" "Sphingobacterium kitahiroshimense" "Bacteria" "Bacteroidetes" "Sphingobacteriia" "Sphingobacteriales" "Sphingobacteriaceae" "Sphingobacterium" "kitahiroshimense" "" "species" "Matsuyama et al., 2008" "1b487ae730993a033dd44f4ec3221d2a" "CoL" 3
"B_SPHNGB_KYNG" "Sphingobacterium kyonggiense" "Bacteria" "Bacteroidetes" "Sphingobacteriia" "Sphingobacteriales" "Sphingobacteriaceae" "Sphingobacterium" "kyonggiense" "" "species" "Choi et al., 2012" "790272" "DSMZ" 3
@ -56933,6 +56965,7 @@
"B_SPHNGB_SOLI" "Sphingobacterium soli" "Bacteria" "Bacteroidetes" "Sphingobacteriia" "Sphingobacteriales" "Sphingobacteriaceae" "Sphingobacterium" "soli" "" "species" "Fu et al., 2017" "795506" "DSMZ" 3
"B_SPHNGB_SPRT" "Sphingobacterium spiritivorum" "Bacteria" "Bacteroidetes" "Sphingobacteriia" "Sphingobacteriales" "Sphingobacteriaceae" "Sphingobacterium" "spiritivorum" "" "species" "Yabuuchi et al., 1983" "7d4093a1793e9c443c9697c57b1b5011" "CoL" 3 "61675006"
"B_SPHNGB_SUAD" "Sphingobacterium suaedae" "Bacteria" "Bacteroidetes" "Sphingobacteriia" "Sphingobacteriales" "Sphingobacteriaceae" "Sphingobacterium" "suaedae" "" "species" "Sun et al., 2015" "793626" "DSMZ" 3
"B_SPHNGB_TBCS" "Sphingobacterium tabacisoli" "Bacteria" "Bacteroidetes" "Sphingobacteriia" "Sphingobacteriales" "Sphingobacteriaceae" "Sphingobacterium" "tabacisoli" "" "species" "Zhou et al., 2017" "796213" "DSMZ" 3
"B_SPHNGB_TERR" "Sphingobacterium terrae" "Bacteria" "Bacteroidetes" "Sphingobacteriia" "Sphingobacteriales" "Sphingobacteriaceae" "Sphingobacterium" "terrae" "" "species" "Chaudhary et al., 2018" "797530" "DSMZ" 3
"B_SPHNGB_THLP" "Sphingobacterium thalpophilum" "Bacteria" "Bacteroidetes" "Sphingobacteriia" "Sphingobacteriales" "Sphingobacteriaceae" "Sphingobacterium" "thalpophilum" "" "species" "Takeuchi et al., 1993" "f74e7f7b4ef1d3d157e02c43c944e41b" "CoL" 3 "113954009"
"B_SPHNGB_THRM" "Sphingobacterium thermophilum" "Bacteria" "Bacteroidetes" "Sphingobacteriia" "Sphingobacteriales" "Sphingobacteriaceae" "Sphingobacterium" "thermophilum" "" "species" "Yabe et al., 2016" "790761" "DSMZ" 3
@ -57001,8 +57034,10 @@
"B_SNGMNS_AERL" "Sphingomonas aerolata" "Bacteria" "Proteobacteria" "Alphaproteobacteria" "Sphingomonadales" "Sphingomonadaceae" "Sphingomonas" "aerolata" "" "species" "Busse et al., 2003" "d71319c356a2c3522a7f29010b7d062d" "CoL" 2 "438982007"
"B_SNGMNS_AERP" "Sphingomonas aerophila" "Bacteria" "Proteobacteria" "Alphaproteobacteria" "Sphingomonadales" "Sphingomonadaceae" "Sphingomonas" "aerophila" "" "species" "Kim et al., 2014" "791661" "DSMZ" 2
"B_SNGMNS_AEST" "Sphingomonas aestuarii" "Bacteria" "Proteobacteria" "Alphaproteobacteria" "Sphingomonadales" "Sphingomonadaceae" "Sphingomonas" "aestuarii" "" "species" "Roh et al., 2009" "9ee9164ad23512c6aa68e8e68b1ad8b5" "CoL" 2
"B_SNGMNS_AGRI" "Sphingomonas agri" "Bacteria" "Proteobacteria" "Alphaproteobacteria" "Sphingomonadales" "Sphingomonadaceae" "Sphingomonas" "agri" "" "species" "Siddiqi et al., 2017" "796214" "DSMZ" 2
"B_SNGMNS_ALPN" "Sphingomonas alpina" "Bacteria" "Proteobacteria" "Alphaproteobacteria" "Sphingomonadales" "Sphingomonadaceae" "Sphingomonas" "alpina" "" "species" "Margesin et al., 2012" "790013" "DSMZ" 2
"B_SNGMNS_ANTR" "Sphingomonas antarctica" "Bacteria" "Proteobacteria" "Alphaproteobacteria" "Sphingomonadales" "Sphingomonadaceae" "Sphingomonas" "antarctica" "" "species" "Huang et al., 2017" "796054" "DSMZ" 2
"B_SNGMNS_AQTC" "Sphingomonas aquatica" "Bacteria" "Proteobacteria" "Alphaproteobacteria" "Sphingomonadales" "Sphingomonadaceae" "Sphingomonas" "aquatica" "" "species" "Choi et al., 2017" "795211" "DSMZ" 2
"B_SNGMNS_AQTL" "Sphingomonas aquatilis" "Bacteria" "Proteobacteria" "Alphaproteobacteria" "Sphingomonadales" "Sphingomonadaceae" "Sphingomonas" "aquatilis" "" "species" "Lee et al., 2001" "a0d00893c721d7c701437af6d0b68e37" "CoL" 2 "438983002"
"B_SNGMNS_ARNT" "Sphingomonas arantia" "Bacteria" "Proteobacteria" "Alphaproteobacteria" "Sphingomonadales" "Sphingomonadaceae" "Sphingomonas" "arantia" "" "species" "Jia et al., 2016" "793916" "DSMZ" 2
"B_SNGMNS_ASCC" "Sphingomonas asaccharolytica" "Bacteria" "Proteobacteria" "Alphaproteobacteria" "Sphingomonadales" "Sphingomonadaceae" "Sphingomonas" "asaccharolytica" "" "species" "Takeuchi et al., 1995" "d0f62018c7890604901ac6b83768877f" "CoL" 2 "439679006"
@ -57030,6 +57065,7 @@
"B_SNGMNS_FLAV" "Sphingomonas flava" "Bacteria" "Proteobacteria" "Alphaproteobacteria" "Sphingomonadales" "Sphingomonadaceae" "Sphingomonas" "flava" "" "species" "Corrig Du et al., 2015" "793390" "DSMZ" 2
"B_SNGMNS_FNTC" "Sphingomonas fonticola" "Bacteria" "Proteobacteria" "Alphaproteobacteria" "Sphingomonadales" "Sphingomonadaceae" "Sphingomonas" "fonticola" "" "species" "Sheu et al., 2015" "793605" "DSMZ" 2
"B_SNGMNS_FRMS" "Sphingomonas formosensis" "Bacteria" "Proteobacteria" "Alphaproteobacteria" "Sphingomonadales" "Sphingomonadaceae" "Sphingomonas" "formosensis" "" "species" "Lin et al., 2012" "790015" "DSMZ" 2
"B_SNGMNS_FRGD" "Sphingomonas frigidaeris" "Bacteria" "Proteobacteria" "Alphaproteobacteria" "Sphingomonadales" "Sphingomonadaceae" "Sphingomonas" "frigidaeris" "" "species" "Lee et al., 2017" "796111" "DSMZ" 2
"B_SNGMNS_GEI" "Sphingomonas gei" "Bacteria" "Proteobacteria" "Alphaproteobacteria" "Sphingomonadales" "Sphingomonadaceae" "Sphingomonas" "gei" "" "species" "Zhu et al., 2015" "792696" "DSMZ" 2
"B_SNGMNS_GMNS" "Sphingomonas gimensis" "Bacteria" "Proteobacteria" "Alphaproteobacteria" "Sphingomonadales" "Sphingomonadaceae" "Sphingomonas" "gimensis" "" "species" "Feng et al., 2014" "792286" "DSMZ" 2
"B_SNGMNS_GNSN" "Sphingomonas ginsengisoli" "Bacteria" "Proteobacteria" "Alphaproteobacteria" "Sphingomonadales" "Sphingomonadaceae" "Sphingomonas" "ginsengisoli" "" "species" "An et al., 2013" "777083" "DSMZ" 2
@ -57062,6 +57098,7 @@
"B_SNGMNS_MALI" "Sphingomonas mali" "Bacteria" "Proteobacteria" "Alphaproteobacteria" "Sphingomonadales" "Sphingomonadaceae" "Sphingomonas" "mali" "" "species" "Takeuchi et al., 1995" "14d21127ff1cd6290f9e142244dc243d" "CoL" 2 "438538007"
"B_SNGMNS_MLNS" "Sphingomonas melonis" "Bacteria" "Proteobacteria" "Alphaproteobacteria" "Sphingomonadales" "Sphingomonadaceae" "Sphingomonas" "melonis" "" "species" "Buonaurio et al., 2002" "5862b2dca76ce845bc6a61e42730d25b" "CoL" 2 "437985007"
"B_SNGMNS_MSPH" "Sphingomonas mesophila" "Bacteria" "Proteobacteria" "Alphaproteobacteria" "Sphingomonadales" "Sphingomonadaceae" "Sphingomonas" "mesophila" "" "species" "Li et al., 2019" "800696" "DSMZ" 2
"B_SNGMNS_MTLL" "Sphingomonas metalli" "Bacteria" "Proteobacteria" "Alphaproteobacteria" "Sphingomonadales" "Sphingomonadaceae" "Sphingomonas" "metalli" "" "species" "Feng et al., 2016" "794142" "DSMZ" 2
"B_SNGMNS_MLLS" "Sphingomonas molluscorum" "Bacteria" "Proteobacteria" "Alphaproteobacteria" "Sphingomonadales" "Sphingomonadaceae" "Sphingomonas" "molluscorum" "" "species" "Romanenko et al., 2007" "faae3d7c0df29170b19eda034247ace1" "CoL" 2 "709300006"
"B_SNGMNS_MNTN" "Sphingomonas montana" "Bacteria" "Proteobacteria" "Alphaproteobacteria" "Sphingomonadales" "Sphingomonadaceae" "Sphingomonas" "montana" "" "species" "Manandhar et al., 2018" "796387" "DSMZ" 2
"B_SNGMNS_MNTS" "Sphingomonas montis" "Bacteria" "Proteobacteria" "Alphaproteobacteria" "Sphingomonadales" "Sphingomonadaceae" "Sphingomonas" "montis" "" "species" "Chaudhary et al., 2019" "798059" "DSMZ" 2
@ -58149,6 +58186,7 @@
"B_STPHY_CAEL" "Staphylococcus caeli" "Bacteria" "Firmicutes" "Bacilli" "Bacillales" "Staphylococcaceae" "Staphylococcus" "caeli" "" "species" "MacFadyen et al., 2019" "798096" "DSMZ" 1
"B_STPHY_CPTS" "Staphylococcus capitis" "Bacteria" "Firmicutes" "Bacilli" "Bacillales" "Staphylococcaceae" "Staphylococcus" "capitis" "" "species" "Kloos et al., 1975" "1193b8010f095b3f414b0b4a7e61d941" "CoL" 1 "40347003"
"B_STPHY_CPTS_URLY" "Staphylococcus capitis urealyticus" "Bacteria" "Firmicutes" "Bacilli" "Bacillales" "Staphylococcaceae" "Staphylococcus" "capitis" "urealyticus" "infraspecies" "Bannerman et al., 1991" "ce0c0335b06f21a72ac55f8b284d52f1" "CoL" 1 "103492009"
"B_STPHY_CPTS_YTCS" "Staphylococcus capitis ureolyticus" "Bacteria" "Firmicutes" "Bacilli" "Bacillales" "Staphylococcaceae" "Staphylococcus" "capitis" "ureolyticus" "species" "Bannerman et al., 1991" "784963" "DSMZ" 1
"B_STPHY_CAPR" "Staphylococcus caprae" "Bacteria" "Firmicutes" "Bacilli" "Bacillales" "Staphylococcaceae" "Staphylococcus" "caprae" "" "species" "Devriese et al., 1998" "bbe445567c16e696e54dc109ba6bc9b8" "CoL" 1 "76969000"
"B_STPHY_CRNS" "Staphylococcus carnosus" "Bacteria" "Firmicutes" "Bacilli" "Bacillales" "Staphylococcaceae" "Staphylococcus" "carnosus" "" "species" "Schleifer et al., 1982" "6e3a53da19778d9db3bef31a02cab1c8" "CoL" 1 "9784002"
"B_STPHY_CRNS_UTLS" "Staphylococcus carnosus utilis" "Bacteria" "Firmicutes" "Bacilli" "Bacillales" "Staphylococcaceae" "Staphylococcus" "carnosus" "utilis" "infraspecies" "Probst et al., 1998" "4f69c1cb6be4cb74200fdab137ff0acc" "CoL" 1 "438733001"
@ -58201,6 +58239,7 @@
"B_STPHY_SCCN" "Staphylococcus succinus" "Bacteria" "Firmicutes" "Bacilli" "Bacillales" "Staphylococcaceae" "Staphylococcus" "succinus" "" "species" "Lambert et al., 1998" "97b472391b6336adfbe3f99fa8b10469" "CoL" 1 "438729008"
"B_STPHY_SCCN_CASE" "Staphylococcus succinus casei" "Bacteria" "Firmicutes" "Bacilli" "Bacillales" "Staphylococcaceae" "Staphylococcus" "succinus" "casei" "infraspecies" "Place et al., 2003" "0926b1c776f856ed9a9f9c1a9fad60f2" "CoL" 1 "440815004"
"B_STPHY_VTLN" "Staphylococcus vitulinus" "Bacteria" "Firmicutes" "Bacilli" "Bacillales" "Staphylococcaceae" "Staphylococcus" "vitulinus" "" "species" "Webster et al., 2004" "9caa058a9ea00c6454065dd426548abe" "CoL" 1 "440569005"
"B_STPHY_VTLS" "Staphylococcus vitulus" "Bacteria" "Firmicutes" "Bacilli" "Bacillales" "Staphylococcaceae" "Staphylococcus" "vitulus" "" "species" "Webster et al., 2004" "784968" "DSMZ" 1
"B_STPHY_WRNR" "Staphylococcus warneri" "Bacteria" "Firmicutes" "Bacilli" "Bacillales" "Staphylococcaceae" "Staphylococcus" "warneri" "" "species" "Kloos et al., 1975" "7ea86b655238a5c4ef000deada350eca" "CoL" 1 "63550006"
"B_STPHY_XYLS" "Staphylococcus xylosus" "Bacteria" "Firmicutes" "Bacilli" "Bacillales" "Staphylococcaceae" "Staphylococcus" "xylosus" "" "species" "Schleifer et al., 1975" "117a3247c6aff3f937e16f4efe1eb22c" "CoL" 1 "32737005"
"B_STPHYL" "Staphylospora" "Bacteria" "Firmicutes" "Bacilli" "Bacillales" "Thermoactinomycetaceae" "Staphylospora" "" "" "genus" "" "DSMZ" 2
@ -58916,7 +58955,9 @@
"B_STRPT_CAML" "Streptococcus cameli" "Bacteria" "Firmicutes" "Bacilli" "Lactobacillales" "Streptococcaceae" "Streptococcus" "cameli" "" "species" "Kadri et al., 2015" "792771" "DSMZ" 1
"B_STRPT_CANS" "Streptococcus canis" "Bacteria" "Firmicutes" "Bacilli" "Lactobacillales" "Streptococcaceae" "Streptococcus" "canis" "" "species" "Devriese et al., 1986" "0849b426bc0abdfe28d40c1495f1fd5e" "CoL" 1 "88231003"
"B_STRPT_CAPR" "Streptococcus caprae" "Bacteria" "Firmicutes" "Bacilli" "Lactobacillales" "Streptococcaceae" "Streptococcus" "caprae" "" "species" "Vela et al., 2016" "793751" "DSMZ" 1
"B_STRPT_CSSL" "Streptococcus casseliflavus" "Bacteria" "Firmicutes" "Bacilli" "Lactobacillales" "Streptococcaceae" "Streptococcus" "casseliflavus" "" "species" "Vaughan et al., 1979" "781304" "DSMZ" 1
"B_STRPT_CSTR" "Streptococcus castoreus" "Bacteria" "Firmicutes" "Bacilli" "Lactobacillales" "Streptococcaceae" "Streptococcus" "castoreus" "" "species" "Lawson et al., 2005" "2a64aa1e506cfff4215fc3ad53922a79" "CoL" 1
"B_STRPT_CAVI" "Streptococcus caviae" "Bacteria" "Firmicutes" "Bacilli" "Lactobacillales" "Streptococcaceae" "Streptococcus" "caviae" "" "species" "Palakawong Na Ayudthaya et al., 2017" "795284" "DSMZ" 1
"B_STRPT_CHNJ" "Streptococcus chenjunshii" "Bacteria" "Firmicutes" "Bacilli" "Lactobacillales" "Streptococcaceae" "Streptococcus" "chenjunshii" "" "species" "Tian et al., 2019" "800708" "DSMZ" 1
"B_STRPT_CNST_PHRY" "Streptococcus constellatus pharyngis" "Bacteria" "Firmicutes" "Bacilli" "Lactobacillales" "Streptococcaceae" "Streptococcus" "constellatus" "pharyngis" "infraspecies" "Whiley et al., 1999" "ac1ecd4578b7331814b44a98c2f733a0" "CoL" 1 "415602002"
"B_STRPT_CNST_VBRG" "Streptococcus constellatus viborgensis" "Bacteria" "Firmicutes" "Bacilli" "Lactobacillales" "Streptococcaceae" "Streptococcus" "constellatus" "viborgensis" "species" "Jensen et al., 2013" "790923" "DSMZ" 1
@ -58986,6 +59027,7 @@
"B_STRPT_ORSR" "Streptococcus orisratti" "Bacteria" "Firmicutes" "Bacilli" "Lactobacillales" "Streptococcaceae" "Streptococcus" "orisratti" "" "species" "Zhu et al., 2000" "6ee21abee87a261ed1b1efb79085d113" "CoL" 1 "438034004"
"B_STRPT_RSIS" "Streptococcus orisuis" "Bacteria" "Firmicutes" "Bacilli" "Lactobacillales" "Streptococcaceae" "Streptococcus" "orisuis" "" "species" "Takada et al., 2007" "3fbb34ad017368789bbad1056730542c" "CoL" 1
"B_STRPT_OVIS" "Streptococcus ovis" "Bacteria" "Firmicutes" "Bacilli" "Lactobacillales" "Streptococcaceae" "Streptococcus" "ovis" "" "species" "Collins et al., 2001" "1fcad4cd3f156ca858b302d38971ee5e" "CoL" 1 "438035003"
"B_STRPT_OVBR" "Streptococcus ovuberis" "Bacteria" "Firmicutes" "Bacilli" "Lactobacillales" "Streptococcaceae" "Streptococcus" "ovuberis" "" "species" "Zamora et al., 2017" "796216" "DSMZ" 1
"B_STRPT_PNDN" "Streptococcus panodentis" "Bacteria" "Firmicutes" "Bacilli" "Lactobacillales" "Streptococcaceae" "Streptococcus" "panodentis" "" "species" "Okamoto et al., 2016" "793690" "DSMZ" 1
"B_STRPT_PNTH" "Streptococcus pantholopis" "Bacteria" "Firmicutes" "Bacilli" "Lactobacillales" "Streptococcaceae" "Streptococcus" "pantholopis" "" "species" "Bai et al., 2016" "794568" "DSMZ" 1
"B_STRPT_PRSN" "Streptococcus parasanguinis" "Bacteria" "Firmicutes" "Bacilli" "Lactobacillales" "Streptococcaceae" "Streptococcus" "parasanguinis" "" "species" "Whiley et al., 1990" "cb634a0af53fb79b57a68cf461079c04" "CoL" 1 "113990002"

12
data-raw/reproduction_of_microorganisms.R
View File

@ -821,6 +821,18 @@ sum(duplicated(MOs$mo))
sum(duplicated(MOs$fullname))
colnames(MOs)
# add the ones we would delete now, that have unexisting codes and names (also in the old names)
MOs <- MOs %>%
mutate(mo = as.character(mo)) %>%
bind_rows(
AMR::microorganisms %>%
mutate(mo = as.character(mo)) %>%
filter(genus %in% gen & !fullname %in% AMR::microorganisms$fullname &
!fullname %in% AMR::microorganisms.old$fullname &
!mo %in% microorganisms$mo) %>%
select(all_of(colnames(AMR::microorganisms)))
)
# here we welcome the new ones:
MOs %>% arrange(fullname) %>% filter(!fullname %in% AMR::microorganisms$fullname) %>% View()
MOs.old %>% arrange(fullname) %>% filter(!fullname %in% AMR::microorganisms.old$fullname) %>% View()