1
0
mirror of https://github.com/msberends/AMR.git synced 2024-12-25 20:06:12 +01:00

(v1.2.0.9012) mo_domain(), improved error handling

This commit is contained in:
dr. M.S. (Matthijs) Berends 2020-06-22 12:18:53 +02:00
parent 93a158aebd
commit 779a4e8348
12 changed files with 24 additions and 25 deletions

View File

@ -1,5 +1,5 @@
Package: AMR
Version: 1.2.0.9011
Version: 1.2.0.9012
Date: 2020-06-22
Title: Antimicrobial Resistance Analysis
Authors@R: c(

View File

@ -1,4 +1,4 @@
# AMR 1.2.0.9011
# AMR 1.2.0.9012
## <small>Last updated: 22-Jun-2020</small>
### New

View File

@ -163,11 +163,10 @@ rsi_calc_df <- function(type, # "proportion", "count" or "both"
stop_ifnot(is.data.frame(data), "`data` must be a data.frame", call = -2)
stop_if(any(dim(data) == 0), "`data` must contain rows and columns", call = -2)
stop_ifnot(any(sapply(data, is.rsi), na.rm = TRUE), "no columns with class <rsi> found. See ?as.rsi.", call = -2)
stop_if(isTRUE(combine_SI) & isTRUE(combine_IR), "either `combine_SI` or `combine_IR` can be TRUE, not both", call = -2)
if (isTRUE(combine_IR) & isTRUE(combine_SI_missing)) {
combine_SI <- FALSE
}
stop_if(isTRUE(combine_SI) & isTRUE(combine_IR), "either `combine_SI` or `combine_IR` can be TRUE, not both", call = -2)
if (as.character(translate_ab) %in% c("TRUE", "official")) {
translate_ab <- "name"

View File

@ -81,7 +81,7 @@
</button>
<span class="navbar-brand">
<a class="navbar-link" href="https://msberends.gitlab.io/AMR/index.html">AMR (for R)</a>
<span class="version label label-default" data-toggle="tooltip" data-placement="bottom" title="Latest development version">1.2.0.9011</span>
<span class="version label label-default" data-toggle="tooltip" data-placement="bottom" title="Latest development version">1.2.0.9012</span>
</span>
</div>

View File

@ -81,7 +81,7 @@
</button>
<span class="navbar-brand">
<a class="navbar-link" href="index.html">AMR (for R)</a>
<span class="version label label-default" data-toggle="tooltip" data-placement="bottom" title="Latest development version">1.2.0.9011</span>
<span class="version label label-default" data-toggle="tooltip" data-placement="bottom" title="Latest development version">1.2.0.9012</span>
</span>
</div>

View File

@ -81,7 +81,7 @@
</button>
<span class="navbar-brand">
<a class="navbar-link" href="../index.html">AMR (for R)</a>
<span class="version label label-default" data-toggle="tooltip" data-placement="bottom" title="Latest development version">1.2.0.9011</span>
<span class="version label label-default" data-toggle="tooltip" data-placement="bottom" title="Latest development version">1.2.0.9012</span>
</span>
</div>

View File

@ -81,7 +81,7 @@
</button>
<span class="navbar-brand">
<a class="navbar-link" href="index.html">AMR (for R)</a>
<span class="version label label-default" data-toggle="tooltip" data-placement="bottom" title="Latest development version">1.2.0.9011</span>
<span class="version label label-default" data-toggle="tooltip" data-placement="bottom" title="Latest development version">1.2.0.9012</span>
</span>
</div>

View File

@ -43,7 +43,7 @@
</button>
<span class="navbar-brand">
<a class="navbar-link" href="index.html">AMR (for R)</a>
<span class="version label label-default" data-toggle="tooltip" data-placement="bottom" title="Latest development version">1.2.0.9011</span>
<span class="version label label-default" data-toggle="tooltip" data-placement="bottom" title="Latest development version">1.2.0.9012</span>
</span>
</div>

View File

@ -81,7 +81,7 @@
</button>
<span class="navbar-brand">
<a class="navbar-link" href="../index.html">AMR (for R)</a>
<span class="version label label-default" data-toggle="tooltip" data-placement="bottom" title="Latest development version">1.2.0.9011</span>
<span class="version label label-default" data-toggle="tooltip" data-placement="bottom" title="Latest development version">1.2.0.9012</span>
</span>
</div>
@ -229,9 +229,9 @@
<small>Source: <a href='https://gitlab.com/msberends/AMR/blob/master/NEWS.md'><code>NEWS.md</code></a></small>
</div>
<div id="amr-1209011" class="section level1">
<h1 class="page-header" data-toc-text="1.2.0.9011">
<a href="#amr-1209011" class="anchor"></a>AMR 1.2.0.9011<small> Unreleased </small>
<div id="amr-1209012" class="section level1">
<h1 class="page-header" data-toc-text="1.2.0.9012">
<a href="#amr-1209012" class="anchor"></a>AMR 1.2.0.9012<small> Unreleased </small>
</h1>
<div id="last-updated-22-jun-2020" class="section level2">
<h2 class="hasAnchor">

View File

@ -10,7 +10,7 @@ articles:
WHONET: WHONET.html
benchmarks: benchmarks.html
resistance_predict: resistance_predict.html
last_built: 2020-06-22T09:16Z
last_built: 2020-06-22T10:13Z
urls:
reference: https://msberends.gitlab.io/AMR/reference
article: https://msberends.gitlab.io/AMR/articles

View File

@ -81,7 +81,7 @@
</button>
<span class="navbar-brand">
<a class="navbar-link" href="../index.html">AMR (for R)</a>
<span class="version label label-default" data-toggle="tooltip" data-placement="bottom" title="Latest development version">1.2.0.9011</span>
<span class="version label label-default" data-toggle="tooltip" data-placement="bottom" title="Latest development version">1.2.0.9012</span>
</span>
</div>