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(v1.7.1.9058) vars selection for set_ab_names()

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dr. M.S. (Matthijs) Berends
2021-12-05 22:06:45 +01:00
parent 3abe61fd61
commit 7965468ccd
100 changed files with 5220 additions and 9555 deletions
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NEWS.md
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# `AMR` 1.7.1.9057
## <small>Last updated: 2 December 2021</small>
# `AMR` 1.7.1.9058
## <small>Last updated: 5 December 2021</small>
### Breaking changes
* Removed `p_symbol()` and all `filter_*()` functions (except for `filter_first_isolate()`), which were all deprecated in a previous package version
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### New
* Support for EUCAST Intrinsic Resistance and Unusual Phenotypes v3.3 (October 2021), effective in the `eucast_rules()` function. This is now the default guideline (all other guidelines are still available).
* Function `set_ab_names()` to rename data set columns that resemble antimicrobial drugs. This allows for quickly renaming columns to official names, ATC codes, etc.
* Function `set_ab_names()` to rename data set columns that resemble antimicrobial drugs. This allows for quickly renaming columns to official names, ATC codes, etc. Its second argument can be a tidyverse way of selecting:
```r
example_isolates %>% set_ab_names(where(is.rsi))
example_isolates %>% set_ab_names(AMC:GEN, property = "atc")
```
* Support for Danish, and also added missing translations of all antimicrobial drugs in Italian, French and Portuguese
### Changed