extend vctrs support

inst/tinytest/test-vctrs.R

@@ -0,0 +1,53 @@
+# ==================================================================== #
+# TITLE                                                                #
+# AMR: An R Package for Working with Antimicrobial Resistance Data     #
+#                                                                      #
+# SOURCE                                                               #
+# https://github.com/msberends/AMR                                     #
+#                                                                      #
+# CITE AS                                                              #
+# Berends MS, Luz CF, Friedrich AW, Sinha BNM, Albers CJ, Glasner C    #
+# (2022). AMR: An R Package for Working with Antimicrobial Resistance  #
+# Data. Journal of Statistical Software, 104(3), 1-31.                 #
+# doi:10.18637/jss.v104.i03                                            #
+#                                                                      #
+# Developed at the University of Groningen, the Netherlands, in        #
+# collaboration with non-profit organisations Certe Medical            #
+# Diagnostics & Advice, and University Medical Center Groningen.       #
+#                                                                      #
+# This R package is free software; you can freely use and distribute   #
+# it for both personal and commercial purposes under the terms of the  #
+# GNU General Public License version 2.0 (GNU GPL-2), as published by  #
+# the Free Software Foundation.                                        #
+# We created this package for both routine data analysis and academic  #
+# research and it was publicly released in the hope that it will be    #
+# useful, but it comes WITHOUT ANY WARRANTY OR LIABILITY.              #
+#                                                                      #
+# Visit our website for the full manual and a complete tutorial about  #
+# how to conduct AMR data analysis: https://msberends.github.io/AMR/   #
+# ==================================================================== #
+
+# extra tests for {vctrs} pkg support
+if (pkg_is_available("dplyr", also_load = FALSE)) {
+  test <- dplyr::tibble(ab = as.ab("CIP"),
+                        mo = as.mo("Escherichia coli"),
+                        mic = as.mic(2),
+                        disk = as.disk(20),
+                        rsi = as.rsi("S"))
+  check1 <- lapply(test, class)
+  test[1, "ab"] <- "GEN"
+  test[1, "mo"] <- "B_KLBSL_PNMN"
+  test[1, "mic"] <- ">=32"
+  test[1, "mic"] <- 32
+  test[1, "disk"] <- "35"
+  test[1, "disk"] <- 25
+  test[1, "disk"] <- 26L
+  test[1, "rsi"] <- "R"
+  check2 <- lapply(test, class)
+  expect_identical(check1, check2)
+  
+  test <- dplyr::tibble(cipro = as.rsi("S"),
+                        variable = "test")
+  expect_equal(nrow(test[quinolones() == "S", ]), 1)
+  expect_equal(nrow(test[quinolones() == "R", ]), 0)
+}