diff --git a/DESCRIPTION b/DESCRIPTION index d1258be1..d68e54ef 100644 --- a/DESCRIPTION +++ b/DESCRIPTION @@ -1,5 +1,5 @@ Package: AMR -Version: 1.8.2.9100 +Version: 1.8.2.9101 Date: 2023-01-24 Title: Antimicrobial Resistance Data Analysis Description: Functions to simplify and standardise antimicrobial resistance (AMR) diff --git a/NEWS.md b/NEWS.md index 1fee08d6..0b480a4c 100755 --- a/NEWS.md +++ b/NEWS.md @@ -1,4 +1,4 @@ -# AMR 1.8.2.9100 +# AMR 1.8.2.9101 *(this beta version will eventually become v2.0! We're happy to reach a new major milestone soon!)* diff --git a/R/aa_globals.R b/R/aa_globals.R index 74e6ffce..e87f094f 100755 --- a/R/aa_globals.R +++ b/R/aa_globals.R @@ -144,6 +144,7 @@ globalVariables(c( "pattern", "R", "rank_index", + "ref_tbl", "reference.rule", "reference.rule_group", "reference.version", diff --git a/R/sysdata.rda b/R/sysdata.rda index ddff74bd..d5b23637 100755 Binary files a/R/sysdata.rda and b/R/sysdata.rda differ diff --git a/inst/tinytest/test-_deprecated.R b/inst/tinytest/test-_deprecated.R index f8839c7a..64549f04 100644 --- a/inst/tinytest/test-_deprecated.R +++ b/inst/tinytest/test-_deprecated.R @@ -48,8 +48,8 @@ expect_identical(suppressWarnings(suppressMessages(as.rsi(data.frame(CIP = mic, expect_identical(suppressWarnings(n_rsi(example_isolates$CIP)), suppressWarnings(n_sir(example_isolates$CIP))) -expect_identical(suppressWarnings(rsi_df(example_isolates$CIP)), - suppressWarnings(sir_df(example_isolates$CIP))) +expect_identical(suppressWarnings(rsi_df(example_isolates)), + suppressWarnings(sir_df(example_isolates))) expect_identical(suppressWarnings(is.rsi.eligible(example_isolates)), suppressWarnings(is_sir_eligible(example_isolates)))