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@ -38,7 +38,7 @@
<a class="navbar-brand me-2" href="../index.html">AMR (for R)</a>
<small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">1.8.2.9060</small>
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@ -375,17 +375,17 @@ names or codes, this would have worked exactly the same way:</p>
<div class="sourceCode" id="cb8"><pre class="downlit sourceCode r">
<code class="sourceCode R"><span><span class="fu"><a href="https://rdrr.io/r/utils/head.html" class="external-link">head</a></span><span class="op">(</span><span class="va">my_TB_data</span><span class="op">)</span></span>
<span><span class="co"># rifampicin isoniazid gatifloxacin ethambutol pyrazinamide moxifloxacin</span></span>
<span><span class="co"># 1 R R S S S R</span></span>
<span><span class="co"># 2 S I I R R R</span></span>
<span><span class="co"># 3 R I S S S R</span></span>
<span><span class="co"># 4 I R S R I I</span></span>
<span><span class="co"># 5 S R R R R I</span></span>
<span><span class="co"># 6 R I S R I R</span></span>
<span><span class="co"># 1 S S I R R S</span></span>
<span><span class="co"># 2 I R I S S R</span></span>
<span><span class="co"># 3 S I R S S S</span></span>
<span><span class="co"># 4 R S R I I R</span></span>
<span><span class="co"># 5 I I R I S I</span></span>
<span><span class="co"># 6 S I I S S S</span></span>
<span><span class="co"># kanamycin</span></span>
<span><span class="co"># 1 R</span></span>
<span><span class="co"># 2 R</span></span>
<span><span class="co"># 3 I</span></span>
<span><span class="co"># 4 S</span></span>
<span><span class="co"># 1 I</span></span>
<span><span class="co"># 2 I</span></span>
<span><span class="co"># 3 R</span></span>
<span><span class="co"># 4 I</span></span>
<span><span class="co"># 5 S</span></span>
<span><span class="co"># 6 I</span></span></code></pre></div>
<p>We can now add the interpretation of MDR-TB to our data set. You can
@ -428,40 +428,40 @@ Unique: 5</p>
<tr class="odd">
<td align="left">1</td>
<td align="left">Mono-resistant</td>
<td align="right">3194</td>
<td align="right">63.88%</td>
<td align="right">3194</td>
<td align="right">63.88%</td>
<td align="right">3201</td>
<td align="right">64.02%</td>
<td align="right">3201</td>
<td align="right">64.02%</td>
</tr>
<tr class="even">
<td align="left">2</td>
<td align="left">Negative</td>
<td align="right">952</td>
<td align="right">19.04%</td>
<td align="right">4146</td>
<td align="right">82.92%</td>
<td align="right">985</td>
<td align="right">19.70%</td>
<td align="right">4186</td>
<td align="right">83.72%</td>
</tr>
<tr class="odd">
<td align="left">3</td>
<td align="left">Multi-drug-resistant</td>
<td align="right">488</td>
<td align="right">9.76%</td>
<td align="right">4634</td>
<td align="right">92.68%</td>
<td align="right">470</td>
<td align="right">9.40%</td>
<td align="right">4656</td>
<td align="right">93.12%</td>
</tr>
<tr class="even">
<td align="left">4</td>
<td align="left">Poly-resistant</td>
<td align="right">264</td>
<td align="right">5.28%</td>
<td align="right">4898</td>
<td align="right">97.96%</td>
<td align="right">240</td>
<td align="right">4.80%</td>
<td align="right">4896</td>
<td align="right">97.92%</td>
</tr>
<tr class="odd">
<td align="left">5</td>
<td align="left">Extensively drug-resistant</td>
<td align="right">102</td>
<td align="right">2.04%</td>
<td align="right">104</td>
<td align="right">2.08%</td>
<td align="right">5000</td>
<td align="right">100.00%</td>
</tr>
@ -476,12 +476,12 @@ Unique: 5</p>
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<p><code>AMR</code> (for R). Free and open-source, licenced under the <a target="_blank" href="https://github.com/msberends/AMR/blob/main/LICENSE" class="external-link">GNU General Public License version 2.0 (GPL-2)</a>.<br>Developed at the <a target="_blank" href="https://www.rug.nl" class="external-link">University of Groningen</a> and <a target="_blank" href="https://www.umcg.nl" class="external-link">University Medical Center Groningen</a> in The Netherlands.</p>
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