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(v0.8.0.9035) add more mo codes

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dr. M.S. (Matthijs) Berends
2019-11-24 22:48:56 +01:00
parent e53cc4990c
commit 7c28b392b1
17 changed files with 27 additions and 25 deletions
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2
R/data.R
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@ -133,7 +133,7 @@ catalogue_of_life <- list(
#' Translation table for common microorganism codes
#'
#' A data set containing commonly used codes for microorganisms, from laboratory systems and WHONET. Define your own with \code{\link{set_mo_source}}.
#' @format A \code{\link{data.frame}} with 5,006 observations and 2 variables:
#' @format A \code{\link{data.frame}} with 5,433 observations and 2 variables:
#' \describe{
#' \item{\code{code}}{Commonly used code of a microorganism}
#' \item{\code{mo}}{ID of the microorganism in the \code{\link{microorganisms}} data set}

2
R/mo_property.R
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@ -57,7 +57,7 @@
#' mo_kingdom("E. coli") # "Bacteria"
#' mo_phylum("E. coli") # "Proteobacteria"
#' mo_class("E. coli") # "Gammaproteobacteria"
#' mo_order("E. coli") # "Enterobacterales" ()
#' mo_order("E. coli") # "Enterobacterales"
#' mo_family("E. coli") # "Enterobacteriaceae"
#' mo_genus("E. coli") # "Escherichia"
#' mo_species("E. coli") # "coli"