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(v0.8.0.9035) add more mo codes

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dr. M.S. (Matthijs) Berends
2019-11-24 22:48:56 +01:00
parent e53cc4990c
commit 7c28b392b1
17 changed files with 27 additions and 25 deletions
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2
man/microorganisms.codes.Rd
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@ -4,7 +4,7 @@
\name{microorganisms.codes}
\alias{microorganisms.codes}
\title{Translation table for common microorganism codes}
\format{A \code{\link{data.frame}} with 5,006 observations and 2 variables:
\format{A \code{\link{data.frame}} with 5,433 observations and 2 variables:
\describe{
\item{\code{code}}{Commonly used code of a microorganism}
\item{\code{mo}}{ID of the microorganism in the \code{\link{microorganisms}} data set}

2
man/mo_property.Rd
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@ -134,7 +134,7 @@ On our website \url{https://msberends.gitlab.io/AMR} you can find \href{https://
mo_kingdom("E. coli") # "Bacteria"
mo_phylum("E. coli") # "Proteobacteria"
mo_class("E. coli") # "Gammaproteobacteria"
mo_order("E. coli") # "Enterobacterales" ()
mo_order("E. coli") # "Enterobacterales"
mo_family("E. coli") # "Enterobacteriaceae"
mo_genus("E. coli") # "Escherichia"
mo_species("E. coli") # "coli"