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cleanup and new intro logo

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dr. M.S. (Matthijs) Berends
2022-11-13 13:44:25 +01:00
parent 496c08d851
commit 7ca44fb756
56 changed files with 4623 additions and 4607 deletions
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4
R/ab_property.R
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@ -30,7 +30,7 @@
#' Get Properties of an Antibiotic
#'
#' Use these functions to return a specific property of an antibiotic from the [antibiotics] data set. All input values will be evaluated internally with [as.ab()].
#' @param x any (vector of) text that can be coerced to a valid antibiotic code with [as.ab()]
#' @param x any (vector of) text that can be coerced to a valid antibiotic drug code with [as.ab()]
#' @param tolower a [logical] to indicate whether the first [character] of every output should be transformed to a lower case [character]. This will lead to e.g. "polymyxin B" and not "polymyxin b".
#' @param property one of the column names of one of the [antibiotics] data set: `vector_or(colnames(antibiotics), sort = FALSE)`.
#' @param language language of the returned text, defaults to system language (see [get_AMR_locale()]) and can also be set with `getOption("AMR_locale")`. Use `language = NULL` or `language = ""` to prevent translation.
@ -378,7 +378,7 @@ set_ab_names <- function(data, ..., property = "name", language = get_AMR_locale
return(data)
}
} else {
# quickly get antibiotic codes
# quickly get antibiotic drug codes
vars_ab <- as.ab(data, fast_mode = TRUE)
vars <- data[!is.na(vars_ab)]
}