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@ -10,7 +10,7 @@
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<a class="navbar-brand me-2" href="../index.html">AMR (for R)</a>
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<small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">1.8.2.9148</small>
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<small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">1.8.2.9150</small>
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<button class="navbar-toggler" type="button" data-bs-toggle="collapse" data-bs-target="#navbar" aria-controls="navbar" aria-expanded="false" aria-label="Toggle navigation">
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@ -193,42 +193,42 @@
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<h2 id="ref-examples">Examples<a class="anchor" aria-label="anchor" href="#ref-examples"></a></h2>
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<div class="sourceCode"><pre class="sourceCode r"><code><span class="r-in"><span><span class="fu">random_mic</span><span class="op">(</span><span class="fl">25</span><span class="op">)</span></span></span>
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<span class="r-out co"><span class="r-pr">#></span> Class 'mic'</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 32 2 1 2 32 0.005 8 64 128 128 256 16 </span>
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<span class="r-out co"><span class="r-pr">#></span> [13] 0.005 0.01 16 0.5 4 0.001 2 64 0.001 0.002 16 0.01 </span>
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<span class="r-out co"><span class="r-pr">#></span> [25] 128 </span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 16 0.001 0.001 0.5 0.002 0.001 2 0.5 64 2 </span>
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<span class="r-out co"><span class="r-pr">#></span> [11] 0.0625 0.25 128 0.025 128 128 8 0.001 32 64 </span>
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<span class="r-out co"><span class="r-pr">#></span> [21] 64 16 0.01 0.125 64 </span>
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<span class="r-in"><span><span class="fu">random_disk</span><span class="op">(</span><span class="fl">25</span><span class="op">)</span></span></span>
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<span class="r-out co"><span class="r-pr">#></span> Class 'disk'</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 48 19 44 26 24 40 49 9 50 47 12 47 34 17 37 13 47 21 36 20 29 6 30 49 43</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 41 30 7 30 50 25 9 50 38 41 12 20 13 16 40 25 25 23 32 46 47 37 20 13 44</span>
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<span class="r-in"><span><span class="fu">random_sir</span><span class="op">(</span><span class="fl">25</span><span class="op">)</span></span></span>
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<span class="r-out co"><span class="r-pr">#></span> Class 'sir'</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] S I S S S I I S S R I I R R S I I S I S S R I R I</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] S S R R S S I S I R I S R S I R R S R S R S R I S</span>
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<span class="r-in"><span></span></span>
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<span class="r-in"><span><span class="co"># \donttest{</span></span></span>
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<span class="r-in"><span><span class="co"># make the random generation more realistic by setting a bug and/or drug:</span></span></span>
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<span class="r-in"><span><span class="fu">random_mic</span><span class="op">(</span><span class="fl">25</span>, <span class="st">"Klebsiella pneumoniae"</span><span class="op">)</span> <span class="co"># range 0.0625-64</span></span></span>
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<span class="r-out co"><span class="r-pr">#></span> Class 'mic'</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 32 64 8 0.5 0.25 8 0.0625 32 16 </span>
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<span class="r-out co"><span class="r-pr">#></span> [10] 0.0625 <=0.001 0.25 2 0.005 0.125 0.01 0.025 0.025 </span>
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<span class="r-out co"><span class="r-pr">#></span> [19] 0.5 32 0.025 16 32 >=128 2 </span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 0.25 128 2 0.001 0.01 0.5 32 8 64 1 </span>
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<span class="r-out co"><span class="r-pr">#></span> [11] 64 1 0.5 0.0625 1 0.025 0.5 0.002 2 0.5 </span>
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<span class="r-out co"><span class="r-pr">#></span> [21] 4 0.025 0.5 0.125 32 </span>
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<span class="r-in"><span><span class="fu">random_mic</span><span class="op">(</span><span class="fl">25</span>, <span class="st">"Klebsiella pneumoniae"</span>, <span class="st">"meropenem"</span><span class="op">)</span> <span class="co"># range 0.0625-16</span></span></span>
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<span class="r-out co"><span class="r-pr">#></span> Class 'mic'</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 8 0.5 2 16 1 8 1 0.25 0.5 2 8 8 1 4 8 </span>
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<span class="r-out co"><span class="r-pr">#></span> [16] 1 2 16 16 2 16 2 0.5 4 8 </span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 16 2 16 8 2 4 32 16 2 <=1 16 8 8 <=1 8 <=1 <=1 2 8 </span>
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<span class="r-out co"><span class="r-pr">#></span> [20] 32 8 2 32 32 32 </span>
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<span class="r-in"><span><span class="fu">random_mic</span><span class="op">(</span><span class="fl">25</span>, <span class="st">"Streptococcus pneumoniae"</span>, <span class="st">"meropenem"</span><span class="op">)</span> <span class="co"># range 0.0625-4</span></span></span>
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<span class="r-out co"><span class="r-pr">#></span> Class 'mic'</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 0.5 >=8 1 0.25 1 2 >=8 0.125 0.25 0.125 0.25 1 </span>
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<span class="r-out co"><span class="r-pr">#></span> [13] 0.125 0.25 0.25 0.25 >=8 0.125 0.5 0.25 0.125 0.25 1 0.5 </span>
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<span class="r-out co"><span class="r-pr">#></span> [25] 0.125</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 2 2 >=8 0.0625 4 1 4 0.25 0.125 4 </span>
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<span class="r-out co"><span class="r-pr">#></span> [11] >=8 0.125 0.25 0.125 0.5 0.5 4 1 0.5 0.5 </span>
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<span class="r-out co"><span class="r-pr">#></span> [21] 0.0625 1 4 4 0.5 </span>
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<span class="r-in"><span></span></span>
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<span class="r-in"><span><span class="fu">random_disk</span><span class="op">(</span><span class="fl">25</span>, <span class="st">"Klebsiella pneumoniae"</span><span class="op">)</span> <span class="co"># range 8-50</span></span></span>
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<span class="r-out co"><span class="r-pr">#></span> Class 'disk'</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 41 35 31 49 20 49 19 45 43 17 45 47 40 28 19 48 11 40 13 28 48 39 20 17 23</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 46 49 42 41 41 17 46 32 45 13 47 43 47 34 43 20 28 40 15 46 26 14 45 41 23</span>
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<span class="r-in"><span><span class="fu">random_disk</span><span class="op">(</span><span class="fl">25</span>, <span class="st">"Klebsiella pneumoniae"</span>, <span class="st">"ampicillin"</span><span class="op">)</span> <span class="co"># range 11-17</span></span></span>
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<span class="r-out co"><span class="r-pr">#></span> Class 'disk'</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 11 11 15 15 14 17 12 16 17 14 12 11 11 16 13 14 14 12 17 14 14 11 12 14 13</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 12 16 14 17 14 17 12 14 17 12 11 16 16 11 12 14 15 11 17 17 13 13 13 16 13</span>
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<span class="r-in"><span><span class="fu">random_disk</span><span class="op">(</span><span class="fl">25</span>, <span class="st">"Streptococcus pneumoniae"</span>, <span class="st">"ampicillin"</span><span class="op">)</span> <span class="co"># range 12-27</span></span></span>
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<span class="r-out co"><span class="r-pr">#></span> Class 'disk'</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 21 23 27 25 16 16 20 20 23 23 18 19 15 23 15 24 22 25 21 17 25 15 16 18 22</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 22 25 16 23 20 25 24 17 23 18 26 16 21 16 25 17 23 23 20 20 27 20 18 24 15</span>
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<span class="r-in"><span><span class="co"># }</span></span></span>
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</code></pre></div>
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</div>
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