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(v2.1.1.9274) Improve is_sir_eligible, rename verbose MDRO output

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dr. M.S. (Matthijs) Berends
2025-05-12 12:35:11 +02:00
parent 3f9012dc47
commit 7d45ca9fbf
7 changed files with 26 additions and 21 deletions
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5
tests/testthat/test-mdro.R
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@ -282,6 +282,11 @@ test_that("test-mdro.R", {
# info = FALSE
# ))
expect_equal(
colnames(suppressWarnings(mdro(example_isolates[1:10, ], verbose = TRUE, info = FALSE))),
c("row_number", "microorganism", "MDRO", "reason", "all_nonsusceptible_columns")
)
# print groups
if (AMR:::pkg_is_available("dplyr", min_version = "1.0.0", also_load = TRUE)) {
expect_output(x <- mdro(example_isolates %>% group_by(ward), info = TRUE, pct_required_classes = 0))