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small text fixes

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dr. M.S. (Matthijs) Berends
2018-12-14 07:48:12 +01:00
parent 81af7be36e
commit 7e5fe75a17
8 changed files with 13 additions and 16 deletions
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2
man/count.Rd
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@ -66,7 +66,7 @@ These functions are meant to count isolates. Use the \code{\link{portion}_*} fun
count_R(septic_patients$amox)
count_IR(septic_patients$amox)
# Or susceptibile isolates
# Or susceptible isolates
count_S(septic_patients$amox)
count_SI(septic_patients$amox)

2
man/portion.Rd
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@ -155,7 +155,7 @@ my_table \%>\%
}
}
\seealso{
\code{\link[AMR]{count}_*} to count resistant and susceptibile isolates.
\code{\link[AMR]{count}_*} to count resistant and susceptible isolates.
}
\keyword{antibiotics}
\keyword{isolate}

4
man/septic_patients.Rd
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@ -12,9 +12,9 @@
\item{\code{ward_clinical}}{logical to determine if ward is a regular clinical ward}
\item{\code{ward_outpatient}}{logical to determine if ward is an outpatient clinic}
\item{\code{age}}{age of the patient}
\item{\code{sex}}{sex of the patient}
\item{\code{gender}}{gender of the patient}
\item{\code{patient_id}}{ID of the patient, first 10 characters of an SHA hash containing irretrievable information}
\item{\code{mo}}{ID of microorganism, see \code{\link{microorganisms}}}
\item{\code{mo}}{ID of microorganism created with \code{\link{as.mo}}, see also \code{\link{microorganisms}}}
\item{\code{peni:rifa}}{40 different antibiotics with class \code{rsi} (see \code{\link{as.rsi}}); these column names occur in \code{\link{antibiotics}} data set and can be translated with \code{\link{abname}}}
}}
\usage{