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(v1.7.1) New CRAN release

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dr. M.S. (Matthijs) Berends
2021-06-03 15:19:21 +02:00
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commit 7e70403efb
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@ -98,16 +98,10 @@ This package can be used for:
#### Latest released version
This package is [available here](https://msberends.r-universe.dev) on the [rOpenSci R-universe platform](https://ropensci.org/r-universe/), as CRAN does not allow frequent updates of large packages (though the `AMR` package is only 7-9 MB). We are working on splitting this package into two: a new data package containing the microbial taxonomy, and the `AMR` package that only contains all functions.
[![CRAN](https://www.r-pkg.org/badges/version-ago/AMR)](https://cran.r-project.org/package=AMR)
[![CRANlogs](https://cranlogs.r-pkg.org/badges/grand-total/AMR)](https://cran.r-project.org/package=AMR)
In the meanwhile, you have to add [our R-universe address](https://msberends.r-universe.dev) to your list of repositories ('repos'), by running:
```r
options(repos = c(getOption("repos"),
msberends = "https://msberends.r-universe.dev"))
```
You can now install or update the `AMR` package in the same way you are used to:
This package is available [here on the official R network (CRAN)](https://cran.r-project.org/package=AMR). Install this package in R from CRAN by using the command:
```r
install.packages("AMR")
@ -117,19 +111,28 @@ It will be downloaded and installed automatically. For RStudio, click on the men
**Note:** Not all functions on this website may be available in this latest release. To use all functions and data sets mentioned on this website, install the latest development version.
#### Latest development version
The latest and unpublished development version can be installed from GitHub using:
```r
install.packages("remotes") # if you haven't already
remotes::install_github("msberends/AMR")
```
![R-code-check](https://github.com/msberends/AMR/workflows/R-code-check/badge.svg?branch=master)
![[CodeFactor](https://www.codefactor.io/repository/github/msberends/amr/badge)](https://www.codefactor.io/repository/github/msberends/amr)
![[Codecov](https://codecov.io/gh/msberends/AMR/branch/master/graph/badge.svg)](https://codecov.io/gh/msberends/AMR?branch=master)
The latest and unpublished development version can be installed from GitHub in two ways:
1. Directly, using:
```r
install.packages("remotes") # if you haven't already
remotes::install_github("msberends/AMR")
```
2. From the [rOpenSci R-universe platform](https://ropensci.org/r-universe/), by adding [our R-universe address](https://msberends.r-universe.dev) to your list of repositories ('repos'):
```r
options(repos = c(getOption("repos"),
msberends = "https://msberends.r-universe.dev"))
```
After this, you can install and update this `AMR` package like any official release (e.g., using `install.packages("AMR")` or in RStudio via *Tools* > *Check for Package Updates...*).
You can also download the latest build from our repository: <https://github.com/msberends/AMR/raw/master/data-raw/AMR_latest.tar.gz>
### Get started