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@ -10,7 +10,7 @@
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<a class="navbar-brand me-2" href="../index.html">AMR (for R)</a>
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<small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">1.8.2.9147</small>
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<small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">1.8.2.9148</small>
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<button class="navbar-toggler" type="button" data-bs-toggle="collapse" data-bs-target="#navbar" aria-controls="navbar" aria-expanded="false" aria-label="Toggle navigation">
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@ -193,42 +193,42 @@
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<h2 id="ref-examples">Examples<a class="anchor" aria-label="anchor" href="#ref-examples"></a></h2>
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<div class="sourceCode"><pre class="sourceCode r"><code><span class="r-in"><span><span class="fu">random_mic</span><span class="op">(</span><span class="fl">25</span><span class="op">)</span></span></span>
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<span class="r-out co"><span class="r-pr">#></span> Class 'mic'</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 128 0.25 0.01 1 0.005 32 0.0625 32 4 </span>
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<span class="r-out co"><span class="r-pr">#></span> [10] 64 8 128 0.5 128 0.005 64 <=0.002 0.025 </span>
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<span class="r-out co"><span class="r-pr">#></span> [19] 4 128 0.025 16 0.25 <=0.002 0.01 </span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 32 2 1 2 32 0.005 8 64 128 128 256 16 </span>
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<span class="r-out co"><span class="r-pr">#></span> [13] 0.005 0.01 16 0.5 4 0.001 2 64 0.001 0.002 16 0.01 </span>
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<span class="r-out co"><span class="r-pr">#></span> [25] 128 </span>
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<span class="r-in"><span><span class="fu">random_disk</span><span class="op">(</span><span class="fl">25</span><span class="op">)</span></span></span>
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<span class="r-out co"><span class="r-pr">#></span> Class 'disk'</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 24 46 46 45 35 44 43 19 37 6 47 49 42 14 42 28 35 12 28 23 9 47 50 18 32</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 48 19 44 26 24 40 49 9 50 47 12 47 34 17 37 13 47 21 36 20 29 6 30 49 43</span>
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<span class="r-in"><span><span class="fu">random_sir</span><span class="op">(</span><span class="fl">25</span><span class="op">)</span></span></span>
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<span class="r-out co"><span class="r-pr">#></span> Class 'sir'</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] I S I I I S S R I R I S R I I I R R I I R S I S I</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] S I S S S I I S S R I I R R S I I S I S S R I R I</span>
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<span class="r-in"><span></span></span>
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<span class="r-in"><span><span class="co"># \donttest{</span></span></span>
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<span class="r-in"><span><span class="co"># make the random generation more realistic by setting a bug and/or drug:</span></span></span>
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<span class="r-in"><span><span class="fu">random_mic</span><span class="op">(</span><span class="fl">25</span>, <span class="st">"Klebsiella pneumoniae"</span><span class="op">)</span> <span class="co"># range 0.0625-64</span></span></span>
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<span class="r-out co"><span class="r-pr">#></span> Class 'mic'</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 128 0.5 <=0.001 32 1 0.125 0.0625 0.25 4 </span>
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<span class="r-out co"><span class="r-pr">#></span> [10] 64 0.125 0.025 64 0.002 1 8 2 128 </span>
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<span class="r-out co"><span class="r-pr">#></span> [19] 32 1 2 0.005 0.01 1 0.005 </span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 32 64 8 0.5 0.25 8 0.0625 32 16 </span>
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<span class="r-out co"><span class="r-pr">#></span> [10] 0.0625 <=0.001 0.25 2 0.005 0.125 0.01 0.025 0.025 </span>
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<span class="r-out co"><span class="r-pr">#></span> [19] 0.5 32 0.025 16 32 >=128 2 </span>
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<span class="r-in"><span><span class="fu">random_mic</span><span class="op">(</span><span class="fl">25</span>, <span class="st">"Klebsiella pneumoniae"</span>, <span class="st">"meropenem"</span><span class="op">)</span> <span class="co"># range 0.0625-16</span></span></span>
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<span class="r-out co"><span class="r-pr">#></span> Class 'mic'</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 16 32 <=1 8 2 8 16 32 4 2 4 2 <=1 2 8 <=1 16 <=1 8 </span>
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<span class="r-out co"><span class="r-pr">#></span> [20] 32 <=1 32 8 8 2 </span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 8 0.5 2 16 1 8 1 0.25 0.5 2 8 8 1 4 8 </span>
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<span class="r-out co"><span class="r-pr">#></span> [16] 1 2 16 16 2 16 2 0.5 4 8 </span>
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<span class="r-in"><span><span class="fu">random_mic</span><span class="op">(</span><span class="fl">25</span>, <span class="st">"Streptococcus pneumoniae"</span>, <span class="st">"meropenem"</span><span class="op">)</span> <span class="co"># range 0.0625-4</span></span></span>
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<span class="r-out co"><span class="r-pr">#></span> Class 'mic'</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 0.5 4 4 4 0.0625 0.125 0.5 4 0.125 0.0625</span>
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<span class="r-out co"><span class="r-pr">#></span> [11] 0.25 0.0625 0.0625 16 8 0.25 0.25 2 0.125 0.0625</span>
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<span class="r-out co"><span class="r-pr">#></span> [21] 0.5 0.25 4 0.25 2 </span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 0.5 >=8 1 0.25 1 2 >=8 0.125 0.25 0.125 0.25 1 </span>
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<span class="r-out co"><span class="r-pr">#></span> [13] 0.125 0.25 0.25 0.25 >=8 0.125 0.5 0.25 0.125 0.25 1 0.5 </span>
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<span class="r-out co"><span class="r-pr">#></span> [25] 0.125</span>
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<span class="r-in"><span></span></span>
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<span class="r-in"><span><span class="fu">random_disk</span><span class="op">(</span><span class="fl">25</span>, <span class="st">"Klebsiella pneumoniae"</span><span class="op">)</span> <span class="co"># range 8-50</span></span></span>
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<span class="r-out co"><span class="r-pr">#></span> Class 'disk'</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 12 22 49 15 47 47 30 29 25 40 40 42 49 19 28 49 29 18 13 43 26 48 34 34 31</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 41 35 31 49 20 49 19 45 43 17 45 47 40 28 19 48 11 40 13 28 48 39 20 17 23</span>
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<span class="r-in"><span><span class="fu">random_disk</span><span class="op">(</span><span class="fl">25</span>, <span class="st">"Klebsiella pneumoniae"</span>, <span class="st">"ampicillin"</span><span class="op">)</span> <span class="co"># range 11-17</span></span></span>
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<span class="r-out co"><span class="r-pr">#></span> Class 'disk'</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 16 17 12 17 14 11 16 14 13 14 17 14 15 14 12 13 11 11 17 11 16 12 11 16 17</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 11 11 15 15 14 17 12 16 17 14 12 11 11 16 13 14 14 12 17 14 14 11 12 14 13</span>
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<span class="r-in"><span><span class="fu">random_disk</span><span class="op">(</span><span class="fl">25</span>, <span class="st">"Streptococcus pneumoniae"</span>, <span class="st">"ampicillin"</span><span class="op">)</span> <span class="co"># range 12-27</span></span></span>
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<span class="r-out co"><span class="r-pr">#></span> Class 'disk'</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 21 15 17 17 17 25 20 23 16 24 27 15 23 25 23 15 16 19 23 18 22 25 26 15 17</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 21 23 27 25 16 16 20 20 23 23 18 19 15 23 15 24 22 25 21 17 25 15 16 18 22</span>
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<span class="r-in"><span><span class="co"># }</span></span></span>
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</code></pre></div>
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</div>
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