1
0
mirror of https://github.com/msberends/AMR.git synced 2025-09-06 06:49:41 +02:00

(v1.1.0.9004) lose dependencies

This commit is contained in:
2020-05-16 13:05:47 +02:00
parent 9fce546901
commit 7f3da74b17
111 changed files with 3211 additions and 2345 deletions

View File

@@ -6,7 +6,7 @@
\alias{filter_first_weighted_isolate}
\title{Determine first (weighted) isolates}
\source{
Methodology of this function is based on:
Methodology of this function is strictly based on:
\strong{M39 Analysis and Presentation of Cumulative Antimicrobial Susceptibility Test Data, 4th Edition}, 2014, \emph{Clinical and Laboratory Standards Institute (CLSI)}. \url{https://clsi.org/standards/products/microbiology/documents/m39/}.
}
@@ -142,6 +142,7 @@ On our website \url{https://msberends.gitlab.io/AMR} you can find \href{https://
# `example_isolates` is a dataset available in the AMR package.
# See ?example_isolates.
\dontrun{
library(dplyr)
# Filter on first isolates:
example_isolates \%>\%
@@ -162,14 +163,12 @@ B <- example_isolates \%>\%
# Have a look at A and B.
# B is more reliable because every isolate is counted only once.
# Gentamicin resitance in hospital D appears to be 3.7\% higher than
# Gentamicin resistance in hospital D appears to be 3.7\% higher than
# when you (erroneously) would have used all isolates for analysis.
## OTHER EXAMPLES:
\dontrun{
# Short-hand versions:
example_isolates \%>\%
filter_first_isolate()