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(v1.1.0.9004) lose dependencies

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dr. M.S. (Matthijs) Berends
2020-05-16 13:05:47 +02:00
parent 9fce546901
commit 7f3da74b17
111 changed files with 3211 additions and 2345 deletions
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12
tests/testthat/test-data.R
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@ -51,17 +51,17 @@ test_that("data sets are valid", {
})
test_that("creation of data sets is valid", {
DT <- make_DT()
expect_lt(nrow(DT[prevalence == 1]), nrow(DT[prevalence == 2]))
expect_lt(nrow(DT[prevalence == 2]), nrow(DT[prevalence == 3]))
df <- create_MO_lookup()
expect_lt(nrow(df[which(df$prevalence == 1), ]), nrow(df[which(df$prevalence == 2), ]))
expect_lt(nrow(df[which(df$prevalence == 2), ]), nrow(df[which(df$prevalence == 3), ]))
expect_true(all(c("mo", "fullname",
"kingdom", "phylum", "class", "order", "family", "genus", "species", "subspecies",
"rank", "col_id", "species_id", "source", "ref", "prevalence",
"kingdom_index", "fullname_lower", "g_species") %in% colnames(DT)))
"kingdom_index", "fullname_lower", "g_species") %in% colnames(df)))
oldDT <- make_oldDT()
olddf <- create_MO.old_lookup()
expect_true(all(c("col_id", "col_id_new", "fullname", "ref", "prevalence",
"fullname_lower", "g_species") %in% colnames(oldDT)))
"fullname_lower", "g_species") %in% colnames(olddf)))
old <- make_trans_tbl()
expect_gt(length(old), 0)