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@ -38,7 +38,7 @@
<a class="navbar-brand me-2" href="../index.html">AMR (for R)</a>
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@ -375,19 +375,19 @@ names or codes, this would have worked exactly the same way:</p>
<div class="sourceCode" id="cb8"><pre class="downlit sourceCode r">
<code class="sourceCode R"><span><span class="fu"><a href="https://rdrr.io/r/utils/head.html" class="external-link">head</a></span><span class="op">(</span><span class="va">my_TB_data</span><span class="op">)</span></span>
<span><span class="co"># rifampicin isoniazid gatifloxacin ethambutol pyrazinamide moxifloxacin</span></span>
<span><span class="co"># 1 I S S S I R</span></span>
<span><span class="co"># 2 S R I R S S</span></span>
<span><span class="co"># 3 R I I S R R</span></span>
<span><span class="co"># 4 I S R R I I</span></span>
<span><span class="co"># 5 S I R R S S</span></span>
<span><span class="co"># 6 R S R R S R</span></span>
<span><span class="co"># 1 R S S S S R</span></span>
<span><span class="co"># 2 I R I R I I</span></span>
<span><span class="co"># 3 R S I S S R</span></span>
<span><span class="co"># 4 R S I S I S</span></span>
<span><span class="co"># 5 R R R I I R</span></span>
<span><span class="co"># 6 S R R S S S</span></span>
<span><span class="co"># kanamycin</span></span>
<span><span class="co"># 1 S</span></span>
<span><span class="co"># 2 I</span></span>
<span><span class="co"># 1 I</span></span>
<span><span class="co"># 2 R</span></span>
<span><span class="co"># 3 S</span></span>
<span><span class="co"># 4 I</span></span>
<span><span class="co"># 5 R</span></span>
<span><span class="co"># 6 I</span></span></code></pre></div>
<span><span class="co"># 4 S</span></span>
<span><span class="co"># 5 S</span></span>
<span><span class="co"># 6 R</span></span></code></pre></div>
<p>We can now add the interpretation of MDR-TB to our data set. You can
use:</p>
<div class="sourceCode" id="cb9"><pre class="downlit sourceCode r">
@ -428,40 +428,40 @@ Unique: 5</p>
<tr class="odd">
<td align="left">1</td>
<td align="left">Mono-resistant</td>
<td align="right">3271</td>
<td align="right">65.42%</td>
<td align="right">3271</td>
<td align="right">65.42%</td>
<td align="right">3163</td>
<td align="right">63.26%</td>
<td align="right">3163</td>
<td align="right">63.26%</td>
</tr>
<tr class="even">
<td align="left">2</td>
<td align="left">Negative</td>
<td align="right">956</td>
<td align="right">19.12%</td>
<td align="right">4227</td>
<td align="right">84.54%</td>
<td align="right">976</td>
<td align="right">19.52%</td>
<td align="right">4139</td>
<td align="right">82.78%</td>
</tr>
<tr class="odd">
<td align="left">3</td>
<td align="left">Multi-drug-resistant</td>
<td align="right">440</td>
<td align="right">8.80%</td>
<td align="right">4667</td>
<td align="right">93.34%</td>
<td align="right">504</td>
<td align="right">10.08%</td>
<td align="right">4643</td>
<td align="right">92.86%</td>
</tr>
<tr class="even">
<td align="left">4</td>
<td align="left">Poly-resistant</td>
<td align="right">247</td>
<td align="right">4.94%</td>
<td align="right">4914</td>
<td align="right">98.28%</td>
<td align="right">259</td>
<td align="right">5.18%</td>
<td align="right">4902</td>
<td align="right">98.04%</td>
</tr>
<tr class="odd">
<td align="left">5</td>
<td align="left">Extensively drug-resistant</td>
<td align="right">86</td>
<td align="right">1.72%</td>
<td align="right">98</td>
<td align="right">1.96%</td>
<td align="right">5000</td>
<td align="right">100.00%</td>
</tr>