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<a class="navbar-brand me-2" href="../index.html">AMR (for R)</a>
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<small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">1.8.2.9091</small>
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<small class="nav-text text-muted me-auto" data-bs-toggle="tooltip" data-bs-placement="bottom" title="">1.8.2.9092</small>
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<button class="navbar-toggler" type="button" data-bs-toggle="collapse" data-bs-target="#navbar" aria-controls="navbar" aria-expanded="false" aria-label="Toggle navigation">
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@ -183,42 +183,41 @@
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<h2 id="ref-examples">Examples<a class="anchor" aria-label="anchor" href="#ref-examples"></a></h2>
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<div class="sourceCode"><pre class="sourceCode r"><code><span class="r-in"><span><span class="fu">random_mic</span><span class="op">(</span><span class="fl">25</span><span class="op">)</span></span></span>
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<span class="r-out co"><span class="r-pr">#></span> Class 'mic'</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 0.5 32 8 0.25 0.0625 128 16 0.0625 0.01 0.5 </span>
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<span class="r-out co"><span class="r-pr">#></span> [11] 0.002 2 0.5 0.01 0.001 1 2 0.025 128 64 </span>
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<span class="r-out co"><span class="r-pr">#></span> [21] 64 2 8 0.25 >=256 </span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 0.002 0.005 32 32 >=256 0.025 8 0.001 64 0.0625</span>
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<span class="r-out co"><span class="r-pr">#></span> [11] >=256 8 1 64 0.025 128 0.01 64 0.025 0.5 </span>
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<span class="r-out co"><span class="r-pr">#></span> [21] 4 0.002 0.5 0.001 0.5 </span>
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<span class="r-in"><span><span class="fu">random_disk</span><span class="op">(</span><span class="fl">25</span><span class="op">)</span></span></span>
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<span class="r-out co"><span class="r-pr">#></span> Class 'disk'</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 45 47 24 47 50 23 36 10 30 50 39 19 46 42 47 49 11 22 12 33 18 22 41 19 40</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 32 43 22 35 41 40 26 6 34 37 42 11 50 10 41 8 7 44 31 19 44 26 16 46 33</span>
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<span class="r-in"><span><span class="fu">random_rsi</span><span class="op">(</span><span class="fl">25</span><span class="op">)</span></span></span>
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<span class="r-out co"><span class="r-pr">#></span> Class 'rsi'</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] R R I I R I S I R I I R I S S S I S S R S I I S R</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] R S S S I R S R S R R R R R S R S S R R I R I R S</span>
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<span class="r-in"><span></span></span>
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<span class="r-in"><span><span class="co"># \donttest{</span></span></span>
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<span class="r-in"><span><span class="co"># make the random generation more realistic by setting a bug and/or drug:</span></span></span>
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<span class="r-in"><span><span class="fu">random_mic</span><span class="op">(</span><span class="fl">25</span>, <span class="st">"Klebsiella pneumoniae"</span><span class="op">)</span> <span class="co"># range 0.0625-64</span></span></span>
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<span class="r-out co"><span class="r-pr">#></span> Class 'mic'</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 0.0625 0.5 0.025 0.001 0.002 8 0.005 128 128 64 </span>
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<span class="r-out co"><span class="r-pr">#></span> [11] 2 0.005 0.5 4 16 32 0.005 16 8 0.25 </span>
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<span class="r-out co"><span class="r-pr">#></span> [21] 32 4 2 0.025 0.002 </span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 0.01 0.125 2 <=0.001 0.025 0.125 0.5 0.5 1 </span>
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<span class="r-out co"><span class="r-pr">#></span> [10] 16 2 0.25 1 64 0.0625 0.5 0.002 0.01 </span>
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<span class="r-out co"><span class="r-pr">#></span> [19] 0.5 0.01 0.5 0.025 0.0625 1 0.025 </span>
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<span class="r-in"><span><span class="fu">random_mic</span><span class="op">(</span><span class="fl">25</span>, <span class="st">"Klebsiella pneumoniae"</span>, <span class="st">"meropenem"</span><span class="op">)</span> <span class="co"># range 0.0625-16</span></span></span>
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<span class="r-out co"><span class="r-pr">#></span> Class 'mic'</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 0.5 4 16 8 8 4 4 1 32 0.5 0.25 2 0.5 8 1 </span>
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<span class="r-out co"><span class="r-pr">#></span> [16] 16 1 8 1 0.5 4 8 8 0.25 2 </span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 2 4 8 4 16 2 8 16 16 2 1 1 4 8 1 16 8 1 2 2 4 1 8 1 8 </span>
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<span class="r-in"><span><span class="fu">random_mic</span><span class="op">(</span><span class="fl">25</span>, <span class="st">"Streptococcus pneumoniae"</span>, <span class="st">"meropenem"</span><span class="op">)</span> <span class="co"># range 0.0625-4</span></span></span>
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<span class="r-out co"><span class="r-pr">#></span> Class 'mic'</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] >=4 0.5 0.5 0.125 0.5 1 0.25 0.25 0.0625 0.25 </span>
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<span class="r-out co"><span class="r-pr">#></span> [11] 0.125 0.5 2 0.0625 0.5 0.25 0.25 0.125 0.5 0.125 </span>
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<span class="r-out co"><span class="r-pr">#></span> [21] 1 0.0625 0.5 >=4 1 </span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 8 0.0625 4 4 0.0625 8 8 0.25 0.25 0.125 </span>
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<span class="r-out co"><span class="r-pr">#></span> [11] 4 0.25 0.125 0.125 8 4 2 0.0625 1 4 </span>
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<span class="r-out co"><span class="r-pr">#></span> [21] 0.0625 1 0.5 16 1 </span>
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<span class="r-in"><span></span></span>
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<span class="r-in"><span><span class="fu">random_disk</span><span class="op">(</span><span class="fl">25</span>, <span class="st">"Klebsiella pneumoniae"</span><span class="op">)</span> <span class="co"># range 8-50</span></span></span>
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<span class="r-out co"><span class="r-pr">#></span> Class 'disk'</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 19 45 28 16 45 33 40 22 20 31 16 38 26 50 39 49 31 27 13 27 29 47 14 41 43</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 44 19 39 43 28 43 13 43 29 8 33 45 19 20 10 32 9 30 35 37 23 40 18 27 22</span>
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<span class="r-in"><span><span class="fu">random_disk</span><span class="op">(</span><span class="fl">25</span>, <span class="st">"Klebsiella pneumoniae"</span>, <span class="st">"ampicillin"</span><span class="op">)</span> <span class="co"># range 11-17</span></span></span>
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<span class="r-out co"><span class="r-pr">#></span> Class 'disk'</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 12 11 14 13 15 13 13 16 14 15 17 17 11 11 14 17 12 17 13 14 14 13 16 11 17</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 14 12 11 16 16 13 15 14 15 13 16 15 13 15 12 16 13 11 17 17 14 15 12 13 15</span>
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<span class="r-in"><span><span class="fu">random_disk</span><span class="op">(</span><span class="fl">25</span>, <span class="st">"Streptococcus pneumoniae"</span>, <span class="st">"ampicillin"</span><span class="op">)</span> <span class="co"># range 12-27</span></span></span>
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<span class="r-out co"><span class="r-pr">#></span> Class 'disk'</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 22 24 26 21 17 26 21 20 20 23 27 17 25 17 19 24 23 21 24 18 21 25 24 21 15</span>
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<span class="r-out co"><span class="r-pr">#></span> [1] 15 15 27 18 26 16 23 18 18 27 23 15 21 26 15 16 23 25 18 18 18 17 24 25 21</span>
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<span class="r-in"><span><span class="co"># }</span></span></span>
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</code></pre></div>
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</div>
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