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check for 2.0

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dr. M.S. (Matthijs) Berends
2023-03-12 13:02:37 +01:00
parent 9179e98e12
commit 80cfc503c2
25 changed files with 127 additions and 134 deletions
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6
R/eucast_rules.R
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@ -476,7 +476,7 @@ eucast_rules <- function(x,
amox$base_ab <- "AMX"
amox$base_name <- ab_name("AMX", language = NULL)
# merge and sort
ab_enzyme <- rbind2(ab_enzyme, ampi, amox)
ab_enzyme <- rbind_AMR(ab_enzyme, ampi, amox)
ab_enzyme <- ab_enzyme[order(ab_enzyme$enzyme_name), , drop = FALSE]
for (i in seq_len(nrow(ab_enzyme))) {
@ -1162,7 +1162,7 @@ edit_sir <- function(x,
)
verbose_new <- verbose_new %pm>% pm_filter(old != new | is.na(old) | is.na(new) & !is.na(old))
# save changes to data set 'verbose_info'
track_changes$verbose_info <- rbind2(
track_changes$verbose_info <- rbind_AMR(
track_changes$verbose_info,
verbose_new
)
@ -1216,7 +1216,7 @@ eucast_dosage <- function(ab, administration = "iv", version_breakpoints = 12.0)
)
)
}
out <- do.call(rbind2, lapply(lst, as.data.frame, stringsAsFactors = FALSE))
out <- do.call(rbind_AMR, lapply(lst, as.data.frame, stringsAsFactors = FALSE))
rownames(out) <- NULL
out$ab <- ab
out$name <- ab_name(ab, language = NULL)