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note about portions

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dr. M.S. (Matthijs) Berends
2018-12-14 07:23:25 +01:00
parent 01a6d56334
commit 81af7be36e
6 changed files with 14 additions and 9 deletions
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NEWS.md
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@@ -15,6 +15,7 @@
* Function `first_isolate`:
* Will now use a column named like "patid" for the patient ID (parameter `col_patientid`), when this parameter was left blank
* Will now use a column named like "key(...)ab" or "key(...)antibiotics" for the key antibiotics (parameter `col_keyantibiotics`), when this parameter was left blank
* A note to the manual pages of the `portion` functions, that low counts can infuence the outcome and that the `portion` functions may camouflage this, since they only return the portion (albeit being dependent on the `minimum` parameter)
* Function `mo_taxonomy` now contains the kingdom too
* Function `first_isolate` will now use a column named like "patid" for the patient ID, when this parameter was left blank
* Reduce false positives for `is.rsi.eligible`